Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   FGL73_RS03420 Genome accession   NZ_CP042408
Coordinates   729505..730575 (-) Length   356 a.a.
NCBI ID   WP_038600916.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 724505..735575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS03405 (FGL73_03405) dprA 724791..725639 (+) 849 WP_146978030.1 DNA-processing protein DprA Machinery gene
  FGL73_RS03410 (FGL73_03410) topA 725901..728045 (+) 2145 WP_146978031.1 type I DNA topoisomerase -
  FGL73_RS03415 (FGL73_03415) trmFO 728117..729460 (+) 1344 WP_098393836.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  FGL73_RS03420 (FGL73_03420) xerS 729505..730575 (-) 1071 WP_038600916.1 tyrosine recombinase XerS Machinery gene
  FGL73_RS03430 (FGL73_03430) - 730967..731800 (-) 834 WP_146978033.1 Rgg/GadR/MutR family transcriptional regulator -
  FGL73_RS03435 (FGL73_03435) - 732017..733180 (+) 1164 WP_098393769.1 MFS transporter -
  FGL73_RS03440 (FGL73_03440) - 733887..734816 (-) 930 WP_146978034.1 N(5)-(carboxyethyl)ornithine synthase -
  FGL73_RS12745 - 734855..735388 (-) 534 WP_306659628.1 CorA family divalent cation transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41381.21 Da        Isoelectric Point: 9.6756

>NTDB_id=331567 FGL73_RS03420 WP_038600916.1 729505..730575(-) (xerS) [Lactococcus lactis strain CBA3619]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=331567 FGL73_RS03420 WP_038600916.1 729505..730575(-) (xerS) [Lactococcus lactis strain CBA3619]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATCCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACGGATGTTTCCCTCTCTGTCTTAGAAAACTTAACTAAACGAGATTTGGAG
TCTTTTATCCTCTATCTTAGAGAAAGACCCCGTCTAAATACGCGCTCTACCCGTTATGGGGTTAGTCAAACAACAATTAA
TCGTACTCTTTCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAACCTTACTTCT
ATCGTAATGTTATGAAGAAAGTACAGACTAAAAAAAAATCCGAAACTTTAGCTTCTCGTGCGGAGAATATTAAAGGGAAA
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGACAATGAGTACGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATCGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAAGTAACTCGGAAAGGAGGAAAAAGGGATGCT
GTTCCTTTTGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGTCGAATAGACCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTACGAGTGACCCCTCACAAACTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGTAATCAGTTAGGGCACGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAGCAAAAAAATGCTTTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767

Multiple sequence alignment