Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EJN90_RS13000 Genome accession   NZ_CP034465
Coordinates   2802638..2804314 (-) Length   558 a.a.
NCBI ID   WP_126111945.1    Uniprot ID   A0A3S9HDS8
Organism   Jeotgalibaca ciconiae strain H21T32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797638..2809314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN90_RS12970 (EJN90_12970) - 2797663..2798004 (-) 342 WP_126111939.1 DUF2187 family protein -
  EJN90_RS12980 (EJN90_12980) - 2798445..2799692 (-) 1248 WP_126111941.1 methionine gamma-lyase family protein -
  EJN90_RS12985 (EJN90_12985) hflX 2799697..2800941 (-) 1245 WP_126111943.1 GTPase HflX -
  EJN90_RS12990 (EJN90_12990) miaA 2800942..2801886 (-) 945 WP_227872517.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  EJN90_RS12995 (EJN90_12995) - 2801879..2802634 (-) 756 WP_227872518.1 glycerophosphodiester phosphodiesterase -
  EJN90_RS13000 (EJN90_13000) recN 2802638..2804314 (-) 1677 WP_126111945.1 DNA repair protein RecN Machinery gene
  EJN90_RS13005 (EJN90_13005) - 2804328..2805173 (-) 846 WP_126111947.1 TlyA family RNA methyltransferase -
  EJN90_RS13010 (EJN90_13010) - 2805176..2806090 (-) 915 WP_126111949.1 polyprenyl synthetase family protein -
  EJN90_RS13015 (EJN90_13015) - 2806111..2806347 (-) 237 WP_126111951.1 exodeoxyribonuclease VII small subunit -
  EJN90_RS13020 (EJN90_13020) xseA 2806340..2807680 (-) 1341 WP_126111953.1 exodeoxyribonuclease VII large subunit -
  EJN90_RS13025 (EJN90_13025) folD 2807690..2808535 (-) 846 WP_126111955.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  EJN90_RS13030 (EJN90_13030) nusB 2808651..2809100 (-) 450 WP_126111957.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63346.79 Da        Isoelectric Point: 4.7697

>NTDB_id=331528 EJN90_RS13000 WP_126111945.1 2802638..2804314(-) (recN) [Jeotgalibaca ciconiae strain H21T32]
MLQELSIKNFAIIDNLEISFDNGMTVLTGETGAGKSIIIDAVGLLAGGRGSADLIRHGEEKTILQGLFSLPDSVQLSTLL
EEYGIENSGDQIILQRELSRNGKNVARVNGSIVTVAILREIANFLIDIHGQNEHQELMNPQNHLYLLDQFSDEKTKKQLA
AYRQNYHSYQVAQEELKKLQSDEQQNIQRIDLLKFQIDEIEQANLQDNEEEFLSEERSLLANYQRIQEGLTNAYRSLQGE
EGNALDQVGVSMESLEKIQDFSPNYSELFKNISEAYYQLEDSIVSIRSEIDDMSYDEGRLNEIELRLEVIHQLKRKYGQS
ITEIKKYYEQIIVELDMISNKESYIARLTKTFEREKSSIEKTGKALSKMRREIAEKLEIEIQKQLKELYMEKAQFKVIFN
EEKTAIHSNGLDVIEFYISTNVGEPLKPLTKIASGGELSRMMLALKAIFTQTQGITSIIFDEVDTGVSGRVAQAIANKIH
LVAEHSQVLCISHLPQVAAMADHHFYIEKEVSGNRTKTHITNIEENTRVMEIARMLAGSDITELSIAHARELLDLAKK

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=331528 EJN90_RS13000 WP_126111945.1 2802638..2804314(-) (recN) [Jeotgalibaca ciconiae strain H21T32]
ATGCTGCAAGAATTATCCATTAAAAATTTTGCGATTATTGATAATTTAGAAATTAGTTTTGATAACGGTATGACGGTTCT
GACAGGGGAAACAGGAGCAGGTAAATCCATTATTATTGATGCTGTAGGACTTCTTGCTGGTGGAAGAGGATCTGCTGATT
TAATTAGACATGGGGAAGAGAAAACAATTTTGCAAGGTTTATTTTCTTTGCCTGACTCGGTACAATTATCTACTTTATTA
GAAGAATATGGGATAGAAAATAGTGGAGATCAGATTATTTTACAAAGAGAACTTTCTCGTAATGGAAAGAATGTTGCCCG
GGTAAATGGAAGTATTGTGACCGTGGCAATTCTCCGCGAAATTGCCAATTTTCTAATTGATATCCATGGACAAAACGAAC
ACCAGGAATTAATGAATCCACAAAACCATTTATATCTACTTGATCAATTTTCAGACGAAAAAACGAAAAAGCAGTTAGCA
GCCTATCGACAAAACTATCATTCTTATCAAGTTGCACAAGAAGAATTAAAAAAATTACAATCAGATGAACAACAAAATAT
TCAAAGAATTGATCTGCTCAAATTTCAGATAGATGAGATCGAACAGGCAAACCTACAAGATAACGAGGAAGAATTTCTAT
CAGAAGAGCGCAGTTTATTAGCCAATTACCAAAGGATTCAAGAAGGATTGACAAATGCTTATCGCTCTCTACAAGGAGAA
GAGGGGAATGCATTGGATCAAGTGGGAGTCAGTATGGAATCTCTAGAAAAAATACAAGATTTCAGTCCCAACTACTCTGA
ACTTTTTAAAAACATATCGGAAGCTTATTACCAATTGGAAGACAGCATCGTTTCAATTCGAAGCGAGATTGACGATATGA
GTTACGATGAAGGAAGATTGAACGAAATTGAGCTGCGACTTGAAGTTATCCATCAATTAAAACGAAAATATGGGCAATCG
ATTACTGAAATAAAAAAATATTATGAACAAATTATTGTTGAATTGGACATGATTTCAAATAAAGAGAGCTATATCGCTCG
ACTTACAAAAACGTTTGAACGAGAAAAAAGCTCGATCGAAAAGACCGGGAAAGCACTTTCTAAAATGAGAAGAGAGATTG
CTGAAAAACTAGAAATTGAAATTCAGAAACAGCTGAAAGAATTGTATATGGAGAAAGCGCAGTTTAAAGTAATTTTTAAT
GAAGAGAAAACAGCCATTCATTCGAATGGTCTTGATGTAATTGAATTTTATATTTCAACCAATGTCGGCGAGCCGCTGAA
ACCATTAACCAAAATTGCGAGTGGCGGCGAATTATCACGAATGATGTTGGCTTTAAAAGCAATCTTTACTCAAACTCAAG
GAATTACAAGTATTATTTTCGATGAGGTCGATACAGGAGTAAGTGGTAGAGTGGCACAAGCAATCGCAAACAAAATCCAT
TTAGTAGCAGAACATTCTCAAGTTTTATGTATTAGTCATCTACCACAAGTCGCTGCTATGGCTGACCACCACTTTTATAT
TGAAAAAGAAGTGAGCGGCAACCGAACAAAGACTCACATCACGAATATAGAAGAGAATACTCGTGTAATGGAGATTGCTA
GAATGTTGGCAGGAAGTGACATTACAGAGCTCTCCATTGCTCATGCAAGAGAACTGTTAGATTTAGCTAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9HDS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.495

Multiple sequence alignment