Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FGL89_RS05270 Genome accession   NZ_CP042374
Coordinates   1055468..1057285 (+) Length   605 a.a.
NCBI ID   WP_014974993.1    Uniprot ID   K0DBY3
Organism   Leuconostoc carnosum strain CBA3620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050468..1062285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS05245 (FGL89_05245) - 1050764..1052119 (+) 1356 WP_147000443.1 Na+/H+ antiporter NhaC family protein -
  FGL89_RS05250 (FGL89_05250) - 1052149..1052487 (-) 339 WP_014974997.1 hypothetical protein -
  FGL89_RS05255 (FGL89_05255) - 1052584..1053582 (-) 999 WP_014974996.1 YeiH family protein -
  FGL89_RS05260 (FGL89_05260) - 1053725..1054549 (+) 825 WP_014974995.1 LysR family transcriptional regulator -
  FGL89_RS05265 (FGL89_05265) - 1054717..1055373 (+) 657 WP_014974994.1 histidine phosphatase family protein -
  FGL89_RS05270 (FGL89_05270) recQ 1055468..1057285 (+) 1818 WP_014974993.1 DNA helicase RecQ Machinery gene
  FGL89_RS05280 (FGL89_05280) - 1058066..1058680 (-) 615 WP_147000444.1 helix-turn-helix domain-containing protein -
  FGL89_RS05285 (FGL89_05285) - 1058829..1059023 (+) 195 WP_147000445.1 helix-turn-helix domain-containing protein -
  FGL89_RS05290 (FGL89_05290) - 1059108..1059992 (+) 885 WP_147000446.1 bifunctional DNA primase/polymerase -
  FGL89_RS05295 (FGL89_05295) - 1059992..1061230 (+) 1239 WP_147000447.1 virulence-associated E family protein -
  FGL89_RS08630 - 1061524..1061691 (+) 168 WP_186727191.1 hypothetical protein -
  FGL89_RS05300 (FGL89_05300) - 1061688..1062005 (+) 318 WP_147000448.1 hypothetical protein -
  FGL89_RS05305 (FGL89_05305) - 1062016..1062255 (+) 240 WP_147000449.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68181.40 Da        Isoelectric Point: 6.2467

>NTDB_id=331528 FGL89_RS05270 WP_014974993.1 1055468..1057285(+) (recQ) [Leuconostoc carnosum strain CBA3620]
MQTPREILKEVFGYDDFRAGQLDIIEKVLAHKHTLAIMPTGGGKSITYQLPALMFEGLTLVISPLISLMKDQVDGLNTMG
IDATFLNSTLTGQEQAQRMSDIRAGLYKMLYVSPERLEIPSFFGFIQQLPIDLVAIDEAHVMSQWGHDFRPSYLNILPLL
HEIPGSPAVLGLTATATERVRESLQQLLDVSDEDTVLTGFARDNLALKIMHYVDKRRYVQDYLRENSEQSGIIYAATRKQ
VDELYEFLHKKGVKVGRYHAGLPEHERQAMQEAFLYDDVQVIVATNAFGMGINKPNVRFVIHYSVPGNIEAYYQEIGRAG
RDGLPAEAVLLYAPQDMHLQEFFVQKSGGSEEYKQNEYNKIREMNAFANTQTCLPRYLLGYFGEIVDQDCKMCSNCLDSR
EMVDVTTDTQKVLANVMRMNQSFGKTMVAKILKGSHDATVKKYDYLTQLPTYGLMKAHTLKDLTAFIDFLTADGYLKTAG
GEFPVLKVTEIGARVLKGQLVVEKRLNRSVVAQQKVVTSAAKGLKLSDDDNQLFARLKAKRLELAREAGIPPFLIFSDKT
LMNMAILRPKTDEEFLALSGVGEKKFEIYHNDFAHVLADDLQVRE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=331528 FGL89_RS05270 WP_014974993.1 1055468..1057285(+) (recQ) [Leuconostoc carnosum strain CBA3620]
ATGCAAACACCGCGTGAGATTTTAAAAGAAGTATTTGGGTACGATGATTTTCGTGCAGGACAATTAGATATTATTGAAAA
AGTGTTAGCTCATAAACATACATTGGCAATTATGCCAACTGGTGGTGGTAAATCGATCACGTATCAATTACCAGCACTGA
TGTTTGAGGGGTTGACTTTAGTTATTTCACCATTAATTTCTTTGATGAAAGACCAGGTTGATGGTCTTAATACGATGGGG
ATTGATGCAACTTTTCTCAATTCTACATTAACAGGACAAGAGCAGGCGCAACGCATGTCAGATATTCGTGCGGGTCTCTA
TAAAATGTTGTATGTATCACCAGAGCGCTTGGAAATTCCAAGTTTTTTTGGTTTTATTCAACAGTTGCCAATTGATTTGG
TTGCGATTGATGAAGCGCACGTCATGTCACAATGGGGGCATGATTTTCGACCTAGTTATTTAAATATTTTACCATTATTA
CATGAAATTCCTGGTTCACCAGCTGTTTTAGGATTAACTGCAACAGCTACTGAACGTGTCCGTGAGAGCTTGCAGCAGTT
ACTTGATGTCTCTGACGAAGATACTGTGCTGACAGGTTTTGCTCGTGATAATCTTGCGCTTAAAATCATGCATTATGTTG
ACAAACGACGTTACGTGCAAGATTATTTACGTGAAAATAGTGAGCAAAGTGGTATTATTTATGCGGCTACACGTAAACAA
GTTGATGAATTATATGAATTTTTACATAAAAAAGGGGTTAAAGTTGGTCGTTATCATGCAGGGTTACCTGAACATGAACG
GCAAGCCATGCAGGAAGCATTCTTATATGACGATGTGCAGGTAATCGTCGCAACCAATGCTTTTGGTATGGGCATTAATA
AGCCCAATGTGCGCTTTGTTATCCACTACTCTGTACCAGGAAATATCGAAGCCTATTATCAAGAAATTGGGCGCGCTGGA
CGTGATGGCTTGCCTGCTGAAGCTGTACTATTATATGCACCACAAGATATGCACTTACAAGAATTTTTTGTACAAAAATC
TGGTGGTTCAGAAGAATATAAACAAAATGAGTATAATAAAATCCGAGAAATGAATGCATTTGCTAATACGCAAACTTGTT
TACCACGCTATTTATTAGGTTATTTTGGTGAAATCGTTGACCAAGATTGCAAGATGTGTTCGAACTGCTTAGATTCTCGC
GAGATGGTTGATGTGACGACAGATACCCAAAAGGTCCTGGCCAATGTGATGCGTATGAATCAGAGCTTTGGTAAAACAAT
GGTTGCCAAAATATTAAAGGGTTCACATGATGCCACTGTGAAAAAGTATGATTATTTGACCCAATTACCCACATATGGCT
TGATGAAAGCACATACGTTGAAAGATTTAACGGCTTTTATTGATTTTCTAACGGCTGATGGTTACTTGAAAACAGCGGGT
GGCGAGTTCCCAGTGCTTAAGGTGACAGAAATCGGTGCTCGTGTGCTTAAAGGACAATTGGTTGTGGAAAAACGACTGAA
TCGTTCTGTGGTGGCACAGCAAAAAGTAGTTACGTCTGCTGCCAAAGGGTTGAAATTATCTGATGATGATAATCAATTAT
TTGCCAGGTTGAAGGCAAAAAGGCTGGAATTGGCTCGAGAGGCAGGTATTCCACCGTTTCTTATTTTTTCGGATAAGACT
TTGATGAATATGGCAATTCTCAGGCCAAAAACAGATGAAGAATTTTTGGCACTTTCTGGTGTTGGTGAAAAGAAGTTTGA
AATCTATCATAACGACTTTGCTCATGTGCTTGCAGATGACTTACAAGTACGAGAATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-322)

HRDC domain (HRDC)

(531-594)

DEAD/DEAH box helicase (DEAD)

(20-181)

RQC domain (RQC)

(400-505)

RecQ zinc-binding (RecQ_Zn_bind)

(334-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DBY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

45.763

97.521

0.446

Multiple sequence alignment