Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EJN92_RS19320 Genome accession   NZ_CP034464
Coordinates   4421002..4422384 (+) Length   460 a.a.
NCBI ID   WP_126129324.1    Uniprot ID   A0A3S9HPE9
Organism   Undibacterium parvum strain DSM 23061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4416002..4427384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN92_RS19295 (EJN92_19295) tsaB 4416425..4417111 (+) 687 WP_126129319.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  EJN92_RS19300 (EJN92_19300) rimI 4417108..4417560 (+) 453 WP_126129320.1 ribosomal protein S18-alanine N-acetyltransferase -
  EJN92_RS19305 (EJN92_19305) - 4417578..4418564 (+) 987 WP_170174922.1 uracil-DNA glycosylase family protein -
  EJN92_RS19310 (EJN92_19310) - 4418584..4419549 (+) 966 WP_126129322.1 DUF1853 family protein -
  EJN92_RS19315 (EJN92_19315) lplT 4419583..4420845 (-) 1263 WP_126129323.1 lysophospholipid transporter LplT -
  EJN92_RS19320 (EJN92_19320) radA 4421002..4422384 (+) 1383 WP_126129324.1 DNA repair protein RadA Machinery gene
  EJN92_RS19325 (EJN92_19325) recD 4422726..4424771 (-) 2046 WP_227869612.1 exodeoxyribonuclease V subunit alpha -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49013.55 Da        Isoelectric Point: 6.9545

>NTDB_id=331498 EJN92_RS19320 WP_126129324.1 4421002..4422384(+) (radA) [Undibacterium parvum strain DSM 23061]
MAKAKTNYTCTECGGILNKWAGQCPSCQQWNTLVETIIEVGGNRFSNTHQSLAQTAPVLNLADIETEDIPRFGTGIEEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQALASLSKLKKVLYVSGEESGSQIALRAKRLMLDATDLHLQAEIQLEKILNT
LADYKPQVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKGNNITMILVGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDTPVAGSCVMVTQEGTRPLLVEIQALVDTSHAPN
AKRLSVGLDQNRLAMLLAVLHRHAGVAASDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAIIPKSNAPKQKIEGLQIIAVDRIDEALSKVRDIDGLLE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=331498 EJN92_RS19320 WP_126129324.1 4421002..4422384(+) (radA) [Undibacterium parvum strain DSM 23061]
ATGGCCAAAGCAAAGACAAATTACACCTGTACCGAATGCGGTGGCATTCTGAATAAATGGGCCGGGCAATGTCCGTCTTG
CCAGCAATGGAATACTTTGGTGGAGACCATCATCGAGGTTGGCGGCAATCGCTTTTCAAATACCCACCAGAGCTTGGCGC
AAACCGCGCCTGTGCTCAATTTGGCAGATATTGAGACTGAGGATATTCCGCGCTTCGGCACCGGCATAGAAGAATTCGAT
AGAGTGCTTGGTGGCGGCTTGGTGCCAGGCGGCGTGGTCTTGATCGGTGGCGACCCTGGCATAGGTAAATCGACGCTCTT
ATTGCAGGCGCTGGCTAGCCTTTCCAAGCTCAAAAAGGTGTTGTACGTCAGCGGTGAAGAATCCGGTTCGCAGATTGCCT
TGCGCGCCAAACGCCTGATGCTCGATGCCACCGATTTACATTTGCAGGCCGAGATACAGCTGGAAAAGATTCTTAATACC
CTGGCCGATTACAAACCGCAGGTGGTGGTGATCGACTCGATACAGACCGTGTATTCGGATGCGCTCAGCTCGGCGCCCGG
CTCGGTGGCGCAGGTGCGTGAATGTGCGGCGCAGCTCACGCGTATCGCCAAGGGCAATAACATCACCATGATCCTGGTCG
GGCATGTCACCAAGGACGGTGCGCTGGCCGGGCCGCGCGTGCTGGAGCATATTGTCGATACCGTCTTGTACTTTGAGGGT
GATACCCATTCTAGTTTTCGATTGGTGCGGGCGATTAAAAACCGCTTTGGCGCGGTCAATGAATTGGGCGTGTTTGCCAT
GACAGAAAAAGGTTTGAAAGGGGTATCCAATCCTTCTGCTTTATTCCTGTCGCAGCACGATACCCCGGTGGCTGGCTCTT
GCGTGATGGTGACGCAGGAAGGCACGCGCCCGCTCTTGGTCGAGATCCAGGCTCTGGTCGATACCTCGCATGCACCCAAC
GCCAAACGGCTGTCGGTAGGCTTGGATCAAAATCGGCTGGCGATGTTACTGGCGGTCTTGCACAGACACGCCGGCGTCGC
CGCCTCCGATCAGGATGTGTTTATCAATGCCGTCGGTGGCGTTAAGATCACCGAGCCAGCCGCCGATCTGGCGGTGCTAC
TGGCGATTAATTCATCGATGCGCAATAAGCCTTTGCCGCGCGGCTTAGTGGTGTTTGGCGAGGTCGGTTTGGCGGGTGAA
ATCCGACCCGCGCCACGCGGTCAGGAACGCTTGCGCGAAGCCGCCAAACTAGGCTTCTCGATTGCCATCATCCCCAAATC
AAATGCGCCAAAACAAAAAATCGAAGGCTTACAAATCATCGCGGTCGACCGTATCGACGAGGCACTGAGCAAGGTCAGAG
ATATCGACGGTCTGCTCGAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)

AAA domain (AAA_25)

(76-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9HPE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

98.913

0.489
  radA Streptococcus mitis NCTC 12261

48.148

99.783

0.48
  radA Streptococcus pneumoniae Rx1

48.148

99.783

0.48
  radA Streptococcus pneumoniae D39

48.148

99.783

0.48
  radA Streptococcus pneumoniae R6

48.148

99.783

0.48
  radA Streptococcus pneumoniae TIGR4

48.148

99.783

0.48
  radA Streptococcus mitis SK321

48.253

99.565

0.48

Multiple sequence alignment