Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EJN92_RS05140 Genome accession   NZ_CP034464
Coordinates   1216056..1217543 (+) Length   495 a.a.
NCBI ID   WP_126126823.1    Uniprot ID   A0A3Q9BP89
Organism   Undibacterium parvum strain DSM 23061     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211056..1222543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN92_RS05115 (EJN92_05115) - 1212478..1213512 (+) 1035 WP_126126818.1 SIS domain-containing protein -
  EJN92_RS05120 (EJN92_05120) - 1213512..1214039 (+) 528 WP_126126819.1 HAD family hydrolase -
  EJN92_RS05125 (EJN92_05125) lptC 1214036..1214677 (+) 642 WP_126126820.1 LPS export ABC transporter periplasmic protein LptC -
  EJN92_RS05130 (EJN92_05130) lptA 1214700..1215293 (+) 594 WP_126126821.1 lipopolysaccharide transport periplasmic protein LptA -
  EJN92_RS05135 (EJN92_05135) lptB 1215295..1216038 (+) 744 WP_126126822.1 LPS export ABC transporter ATP-binding protein -
  EJN92_RS05140 (EJN92_05140) rpoN/rpoN1 1216056..1217543 (+) 1488 WP_126126823.1 RNA polymerase factor sigma-54 Machinery gene
  EJN92_RS05145 (EJN92_05145) hpf 1217665..1218009 (+) 345 WP_126126824.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EJN92_RS05150 (EJN92_05150) - 1218394..1219485 (+) 1092 WP_126126825.1 enoyl-CoA hydratase/isomerase family protein -
  EJN92_RS05155 (EJN92_05155) - 1219586..1220296 (-) 711 WP_126126826.1 DUF4197 domain-containing protein -
  EJN92_RS05160 (EJN92_05160) - 1220339..1221484 (-) 1146 WP_126126827.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55222.94 Da        Isoelectric Point: 4.9652

>NTDB_id=331484 EJN92_RS05140 WP_126126823.1 1216056..1217543(+) (rpoN/rpoN1) [Undibacterium parvum strain DSM 23061]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELENLLIENPMLERVDNPLDSAVRLLADGAIGSTESRSETEFGVS
PVDDQNNASSDSGEVSEVSNPSDSTSPSETDWSFDDAPQGSKSSEEDEGRPQLEAAHISLKEHLLEQMRLNLREPRDLAL
VELVIDALDDSGYLIESLEDIHSSIPLELLVEPEELNFALFMVQSFDPPGVGARNCAECLALQIKRLPKIPFVTRRLALA
IVETQIGLFAQRDFARLKKIFNCDDEDLREAQVVIRLCKPKPGAEFAASSSDYVVPDVIVSKSADGWQVVLNQDIMPKLR
VNSMYANIMKQNRGDGSLTPQLQEARWLIKNMRQRFETILRVSQAIVERQRNFFTHGAVAMRPLVLREIADTLGLHESTI
SRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENQKSPLSDSKIADMLGEQGMVIARRTVAKY
REALKIPPVSLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=331484 EJN92_RS05140 WP_126126823.1 1216056..1217543(+) (rpoN/rpoN1) [Undibacterium parvum strain DSM 23061]
ATGAAGCAAAGCCTACAGCTACGCACCTCGCAACATCTGGCGCTCACGCCACAATTGCAGCAATCGATACGGCTACTGCA
ATTGTCTACGCTAGAACTGCATCAAGAGCTAGAAAACTTGCTGATAGAAAATCCCATGCTGGAGCGGGTTGATAATCCTC
TCGATAGCGCGGTACGCTTGTTGGCGGACGGCGCTATTGGCAGTACAGAATCACGCTCAGAAACGGAGTTCGGGGTCAGC
CCCGTTGATGATCAGAATAATGCAAGTAGCGATTCGGGCGAAGTCTCTGAAGTCAGTAATCCTAGCGACAGTACCAGTCC
TAGCGAAACCGACTGGAGTTTTGATGACGCTCCGCAAGGCAGTAAATCCTCAGAAGAAGATGAGGGAAGACCGCAATTAG
AAGCGGCGCATATTTCCCTAAAAGAACATTTGCTAGAGCAGATGCGCCTGAATCTGCGTGAACCACGCGATCTGGCCTTG
GTGGAATTGGTGATCGATGCTCTCGATGACAGCGGCTATCTGATCGAGAGTCTGGAAGATATTCATTCCAGCATTCCGCT
AGAACTCTTGGTCGAACCTGAAGAACTCAATTTTGCCTTGTTTATGGTGCAAAGTTTTGACCCGCCAGGAGTGGGCGCTC
GCAACTGCGCTGAGTGCCTGGCGCTGCAGATCAAACGTCTGCCCAAAATCCCTTTCGTCACCCGCCGCCTCGCACTTGCC
ATAGTAGAAACGCAAATAGGCTTATTTGCGCAACGCGATTTTGCTCGCTTAAAGAAAATTTTTAATTGCGACGATGAAGA
TTTGCGTGAAGCGCAGGTGGTGATACGTTTGTGCAAACCCAAACCTGGCGCCGAGTTTGCCGCCAGCAGTTCTGATTATG
TGGTGCCAGATGTGATCGTCAGCAAATCGGCTGACGGCTGGCAAGTGGTATTGAACCAAGACATCATGCCTAAGCTGCGC
GTGAATAGCATGTATGCCAATATCATGAAGCAAAATCGTGGCGATGGCAGCCTTACCCCGCAGTTACAGGAAGCACGTTG
GCTGATCAAAAATATGCGACAACGTTTCGAGACTATCTTGCGTGTTTCGCAAGCGATAGTTGAAAGACAACGTAACTTTT
TCACACATGGAGCGGTCGCGATGCGCCCTCTTGTTTTGCGCGAAATTGCTGATACACTGGGTTTACATGAGAGTACAATT
TCTCGTGTGACCACTCAGAAATACATGCTGACCCCACATGGTATGTTTGAGCTGAAGTATTTTTTCGGTAGCCACGTCGC
CACTGAAACCGGGGGAGAAGCATCATCAACGGCGATACGAGCACTCATCAAACAATTGATAGGAGCAGAAAACCAGAAAA
GCCCACTCTCTGATAGCAAGATTGCAGACATGCTGGGTGAACAAGGGATGGTCATTGCGCGCCGCACAGTCGCCAAGTAC
CGCGAAGCCCTTAAAATTCCACCAGTCAGCTTGCGAAAATCTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-493)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9BP89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.406

100

0.606

Multiple sequence alignment