Detailed information NTG0331450

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FS836_RS14215
• Genome accession: NZ_CP042352
• Coordinates: 2862167..2863159 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM9513
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2857167..2868159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FS836_RS14195 (FS836_14280)	otnK	2857942..2859204 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
FS836_RS14200 (FS836_14285)	ygbL	2859201..2859839 (+)	639	WP_001278994.1	aldolase	-
FS836_RS14205 (FS836_14290)	ygbM	2859844..2860620 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FS836_RS14210 (FS836_14295)	ygbN	2860709..2862073 (+)	1365	WP_196611614.1	GntP family transporter	-
FS836_RS14215 (FS836_14300)	rpoS	2862167..2863159 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FS836_RS14220 (FS836_14305)	nlpD	2863222..2864316 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FS836_RS14225 (FS836_14310)	pcm	2864501..2865127 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FS836_RS14230 (FS836_14315)	surE	2865121..2865882 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FS836_RS14235 (FS836_14320)	truD	2865863..2866912 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FS836_RS14240 (FS836_14325)	ispF	2866909..2867388 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FS836_RS14245 (FS836_14330)	ispD	2867388..2868098 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=331450 FS836_RS14215 WP_000081550.1 2862167..2863159(-) (rpoS) [Escherichia coli strain RM9513]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=331450 FS836_RS14215 WP_000081550.1 2862167..2863159(-) (rpoS) [Escherichia coli strain RM9513]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715