Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FS836_RS13940 Genome accession   NZ_CP042352
Coordinates   2809826..2810341 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM9513     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2804826..2815341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS836_RS13915 (FS836_13995) ygaZ 2805225..2805962 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FS836_RS13920 (FS836_14000) ygaH 2805952..2806287 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FS836_RS13925 (FS836_14005) emrR 2806378..2806908 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FS836_RS13930 (FS836_14010) emrA 2807035..2808207 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FS836_RS13935 (FS836_14015) emrB 2808224..2809762 (+) 1539 WP_265467146.1 multidrug efflux MFS transporter permease subunit EmrB -
  FS836_RS13940 (FS836_14020) luxS 2809826..2810341 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FS836_RS13945 (FS836_14025) gshA 2810491..2812047 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  FS836_RS13950 (FS836_14030) yqaA 2812120..2812548 (-) 429 WP_001287454.1 YqaA family protein -
  FS836_RS13955 (FS836_14035) yqaB 2812545..2813111 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FS836_RS13985 (FS836_14065) csrA 2814569..2814754 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=331447 FS836_RS13940 WP_001130211.1 2809826..2810341(-) (luxS) [Escherichia coli strain RM9513]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=331447 FS836_RS13940 WP_001130211.1 2809826..2810341(-) (luxS) [Escherichia coli strain RM9513]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731