Detailed information NTG0331365

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FS611_RS16095
• Genome accession: NZ_CP042350
• Coordinates: 3189041..3190033 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM10410
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3184041..3195033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FS611_RS16075 (FS611_16070)	otnK	3184816..3186078 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
FS611_RS16080 (FS611_16075)	ygbL	3186075..3186713 (+)	639	WP_001278994.1	aldolase	-
FS611_RS16085 (FS611_16080)	ygbM	3186718..3187494 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
FS611_RS16090 (FS611_16085)	ygbN	3187583..3188947 (+)	1365	WP_000104459.1	GntP family transporter	-
FS611_RS16095 (FS611_16090)	rpoS	3189041..3190033 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FS611_RS16100 (FS611_16095)	nlpD	3190096..3191190 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FS611_RS16105 (FS611_16100)	pcm	3191375..3192001 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FS611_RS16110 (FS611_16105)	surE	3191995..3192756 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FS611_RS16115 (FS611_16110)	truD	3192737..3193786 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
FS611_RS16120 (FS611_16115)	ispF	3193783..3194262 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FS611_RS16125 (FS611_16120)	ispD	3194262..3194972 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=331365 FS611_RS16095 WP_000081550.1 3189041..3190033(-) (rpoS) [Escherichia coli strain RM10410]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=331365 FS611_RS16095 WP_000081550.1 3189041..3190033(-) (rpoS) [Escherichia coli strain RM10410]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715