Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPJ_RS02465 Genome accession   NC_012466
Coordinates   471843..472574 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 466843..477574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS02440 - 468371..468727 (+) 357 WP_000114427.1 hypothetical protein -
  SPJ_RS02445 (SPJ_0484) dnaJ 469129..470265 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  SPJ_RS12990 (SPJ_0485) - 470577..470906 (-) 330 WP_012677068.1 hypothetical protein -
  SPJ_RS02455 (SPJ_0486) - 471068..471355 (-) 288 WP_000777753.1 hypothetical protein -
  SPJ_RS02460 (SPJ_0487) - 471365..471775 (-) 411 WP_001278301.1 HIT family protein -
  SPJ_RS02465 (SPJ_0488) pptA 471843..472574 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPJ_RS02470 (SPJ_0489) - 472571..473620 (+) 1050 WP_000653774.1 ABC transporter permease -
  SPJ_RS02475 (SPJ_0490) - 473788..474117 (-) 330 WP_000132572.1 hypothetical protein -
  SPJ_RS02480 (SPJ_0491) - 474393..474731 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  SPJ_RS02485 (SPJ_0492) comE/blpR 474736..475473 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  SPJ_RS02490 (SPJ_0493) - 475487..476827 (+) 1341 WP_001017642.1 sensor histidine kinase -
  SPJ_RS02495 (SPJ_0494) blpC 476898..477026 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=33136 SPJ_RS02465 WP_000889923.1 471843..472574(+) (pptA) [Streptococcus pneumoniae JJA]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=33136 SPJ_RS02465 WP_000889923.1 471843..472574(+) (pptA) [Streptococcus pneumoniae JJA]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment