Detailed information NTG0331297

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: EJN89_RS07025
• Genome accession: NZ_CP034441
• Coordinates: 1370049..1371674 (+)
• Length: 541 a.a.
• NCBI ID: WP_117207324.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain PMB 81-4
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	1368678..1371674	1370049..1371674	within	0

Gene organization within MGE regions

Location: 1368678..1371674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJN89_RS07020	ccrA	1368678..1370027 (+)	1350	WP_000806248.1	recombinase family protein	Machinery gene
EJN89_RS07025	ccrB	1370049..1371674 (+)	1626	WP_117207324.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62502.48 Da
• Isoelectric Point: 9.7823

>NTDB_id=331297 EJN89_RS07025 WP_117207324.1 1370049..1371674(+) (ccrB) [Staphylococcus aureus strain PMB 81-4]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNSYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQTLASFSEFERNTILENIYNGQHQRALKGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAKY
KDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAALNHDIAYKQQQFDE
VNIKLKNLVQTIEDNPDLTSALKPTIHQYETKLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide

• Length: 1626 bp

>NTDB_id=331297 EJN89_RS07025 WP_117207324.1 1370049..1371674(+) (ccrB) [Staphylococcus aureus strain PMB 81-4]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGCATCGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTCAACAGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGTCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGTATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGACACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACAACGGGCAACATCAAAGAGCTTTAAAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCACAAAGGCTATGTGACTAAAAAAG
GCAATCCATTTAGTATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAGTAC
AAAGATTGGAATGAAAAGCGTCGTAAAGGACTAAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTATTAG
TCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGGAAAGGAACCAATC
TATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGATGGT
ACTAAGAAGCGAATACGTTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGTTAG
AGCCGATGTCATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTATAAACAACAACAATTTGATGAA
GTAAACATCAAACTTAAAAATCTCGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACAAAACTGAATGATATTACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCA
TTATACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAAGCT
CAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTTTGC
CTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (11-154)

• Recombinase (Recombinase) (179-279)

• Ogr/Delta-like zinc finger (Ogr_Delta) (300-355)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	80.627	100	0.808