Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FSN21_RS07855 Genome accession   NZ_CP042346
Coordinates   1596302..1597981 (-) Length   559 a.a.
NCBI ID   WP_147032778.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN9S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591302..1602981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSN21_RS07835 (FSN21_07835) - 1591452..1592726 (-) 1275 WP_147032776.1 dihydrolipoamide acetyltransferase family protein -
  FSN21_RS07840 (FSN21_07840) - 1592739..1593722 (-) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  FSN21_RS07845 (FSN21_07845) - 1593722..1594714 (-) 993 WP_000568353.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  FSN21_RS07850 (FSN21_07850) lpdA 1594730..1596151 (-) 1422 WP_001291535.1 dihydrolipoyl dehydrogenase -
  FSN21_RS07855 (FSN21_07855) recN 1596302..1597981 (-) 1680 WP_147032778.1 DNA repair protein RecN Machinery gene
  FSN21_RS07860 (FSN21_07860) ahrC 1597997..1598449 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  FSN21_RS07865 (FSN21_07865) - 1598881..1599762 (-) 882 WP_000183378.1 polyprenyl synthetase family protein -
  FSN21_RS07870 (FSN21_07870) - 1599740..1599970 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  FSN21_RS07875 (FSN21_07875) xseA 1599963..1601300 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  FSN21_RS07880 (FSN21_07880) nusB 1601317..1601706 (-) 390 WP_000087388.1 transcription antitermination factor NusB -
  FSN21_RS07885 (FSN21_07885) - 1601766..1602128 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64355.97 Da        Isoelectric Point: 4.7316

>NTDB_id=331198 FSN21_RS07855 WP_147032778.1 1596302..1597981(-) (recN) [Staphylococcus aureus strain BSN9S]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNFEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=331198 FSN21_RS07855 WP_147032778.1 1596302..1597981(-) (recN) [Staphylococcus aureus strain BSN9S]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAATTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAATCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
ACAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTTTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTATATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATCTCTCACTTACCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442