Detailed information NTG0331096

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E3B71_RS11880
• Genome accession: NZ_CP042336
• Coordinates: 1996279..1997271 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GZ04-0086
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1991279..2002271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3B71_RS11855 (E3B71_10005)	ygbN	1991935..1993299 (+)	1365	WP_000104429.1	GntP family transporter	-
E3B71_RS11860 (E3B71_10010)	-	1993338..1993574 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E3B71_RS11865 (E3B71_10015)	-	1993585..1995011 (-)	1427	Protein_1961	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E3B71_RS11870 (E3B71_10020)	-	1995011..1995604 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E3B71_RS11875 (E3B71_10025)	-	1995751..1996158 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
E3B71_RS11880 (E3B71_10030)	rpoS	1996279..1997271 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E3B71_RS11885 (E3B71_10035)	nlpD	1997334..1998428 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
E3B71_RS11890 (E3B71_10040)	pcm	1998613..1999239 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E3B71_RS11895 (E3B71_10045)	surE	1999233..1999994 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E3B71_RS11900 (E3B71_10050)	truD	1999975..2001024 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E3B71_RS11905 (E3B71_10055)	ispF	2001021..2001500 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E3B71_RS11910 (E3B71_10060)	ispD	2001500..2002210 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=331096 E3B71_RS11880 WP_000081550.1 1996279..1997271(-) (rpoS) [Escherichia coli strain GZ04-0086]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=331096 E3B71_RS11880 WP_000081550.1 1996279..1997271(-) (rpoS) [Escherichia coli strain GZ04-0086]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715