Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPSJM_RS03860 Genome accession   NC_014560
Coordinates   819556..821076 (-) Length   506 a.a.
NCBI ID   WP_000611015.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 814556..826076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS03845 (HPSJM_03995) - 815483..816232 (-) 750 WP_000609187.1 hypothetical protein -
  HPSJM_RS03850 (HPSJM_04000) - 816219..817436 (-) 1218 WP_013356417.1 DNA cytosine methyltransferase -
  HPSJM_RS03855 (HPSJM_04005) - 817471..819531 (-) 2061 WP_001158788.1 heavy metal translocating P-type ATPase -
  HPSJM_RS03860 (HPSJM_04010) comM 819556..821076 (-) 1521 WP_000611015.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPSJM_RS03865 (HPSJM_04015) def 821082..821606 (-) 525 WP_001185805.1 peptide deformylase -
  HPSJM_RS03870 (HPSJM_04020) clpP 821611..822198 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPSJM_RS03875 (HPSJM_04025) tig 822219..823574 (-) 1356 WP_001047738.1 trigger factor -
  HPSJM_RS03880 (HPSJM_04030) - 823687..824523 (-) 837 WP_001037745.1 outer membrane protein -
  HPSJM_RS03885 (HPSJM_04035) hpaA 824545..825327 (-) 783 WP_000855919.1 flagellar sheath lipoprotein HpaA -
  HPSJM_RS03890 (HPSJM_04040) moaC 825446..825922 (-) 477 WP_001131535.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57206.31 Da        Isoelectric Point: 8.4725

>NTDB_id=33109 HPSJM_RS03860 WP_000611015.1 819556..821076(-) (comM) [Helicobacter pylori SJM180]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIECETSFLFVGAQNPCLCGNLLSATKVCRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIERSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=33109 HPSJM_RS03860 WP_000611015.1 819556..821076(-) (comM) [Helicobacter pylori SJM180]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCGGGCTTGGCTAATAACTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTCTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCTAAAA
TCATTGCACCTAAGGCGAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CCTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGCTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATGCGAAAC
CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGTATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGTTCTGTCAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAGATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment