Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EJC75_RS03290 Genome accession   NZ_CP034404
Coordinates   310840..311469 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CRE10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 305840..316469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJC75_RS03270 (EJC75_03270) ycbZ 306229..307989 (-) 1761 WP_000156526.1 Lon protease family protein -
  EJC75_RS03275 (EJC75_03275) matP 308175..308627 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EJC75_RS03280 (EJC75_03280) ompA 308703..309755 (-) 1053 WP_000750419.1 porin OmpA -
  EJC75_RS03285 (EJC75_03285) sulA 310112..310621 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EJC75_RS03290 (EJC75_03290) sxy/tfoX 310840..311469 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EJC75_RS03295 (EJC75_03295) yccS 311432..313594 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EJC75_RS03300 (EJC75_03300) yccF 313604..314051 (-) 448 Protein_290 YccF domain-containing protein -
  EJC75_RS03305 (EJC75_03305) helD 314174..316228 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=331085 EJC75_RS03290 WP_000839153.1 310840..311469(+) (sxy/tfoX) [Escherichia coli strain CRE10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=331085 EJC75_RS03290 WP_000839153.1 310840..311469(+) (sxy/tfoX) [Escherichia coli strain CRE10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment