Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E3B71_RS08180 Genome accession   NZ_CP042336
Coordinates   1220388..1221815 (+) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain GZ04-0086     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1215388..1226815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3B71_RS08145 (E3B71_06295) - 1215556..1215927 (+) 372 WP_001295631.1 IS110 family transposase -
  E3B71_RS08155 (E3B71_06305) - 1216381..1216563 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E3B71_RS08160 (E3B71_06310) tmaR 1216664..1216993 (-) 330 WP_000450409.1 DUF496 family protein -
  E3B71_RS08165 (E3B71_06315) yeeA 1217165..1218223 (-) 1059 WP_001200905.1 FUSC family protein -
  E3B71_RS08170 (E3B71_06320) sbmC 1218421..1218894 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  E3B71_RS08175 (E3B71_06325) dacD 1219013..1220179 (-) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E3B71_RS08180 (E3B71_06330) sbcB 1220388..1221815 (+) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  E3B71_RS08185 (E3B71_06335) tsuB 1221858..1222085 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E3B71_RS08190 (E3B71_06340) tsuA 1222099..1223157 (-) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  E3B71_RS08195 (E3B71_06345) plaP 1223336..1224694 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E3B71_RS08200 (E3B71_06350) yoeI 1224684..1224746 (-) 63 WP_010723108.1 membrane protein YoeI -
  E3B71_RS08205 (E3B71_06355) yeeY 1224961..1225890 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  E3B71_RS08210 (E3B71_06360) yeeZ 1225936..1226760 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=331084 E3B71_RS08180 WP_000980567.1 1220388..1221815(+) (sbcB) [Escherichia coli strain GZ04-0086]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=331084 E3B71_RS08180 WP_000980567.1 1220388..1221815(+) (sbcB) [Escherichia coli strain GZ04-0086]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581