Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FKV26_RS13020 | Genome accession | NZ_CP042299 |
| Coordinates | 2861033..2862202 (+) | Length | 389 a.a. |
| NCBI ID | WP_000136718.1 | Uniprot ID | - |
| Organism | Vibrio cholerae O1 strain AAS91 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2856033..2867202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FKV26_RS12985 (FKV26_13360) | - | 2856870..2857340 (-) | 471 | WP_000224703.1 | Dps family protein | - |
| FKV26_RS12990 (FKV26_13365) | - | 2857510..2857839 (-) | 330 | WP_001117044.1 | DUF2500 domain-containing protein | - |
| FKV26_RS12995 (FKV26_13370) | - | 2858044..2858412 (+) | 369 | WP_001289435.1 | DUF4145 domain-containing protein | - |
| FKV26_RS13000 (FKV26_13385) | - | 2858915..2859172 (+) | 258 | WP_000479993.1 | hypothetical protein | - |
| FKV26_RS13005 (FKV26_13390) | - | 2859289..2859918 (+) | 630 | WP_000062274.1 | lysoplasmalogenase | - |
| FKV26_RS13010 (FKV26_13395) | - | 2859967..2860233 (-) | 267 | WP_000645840.1 | DUF1145 domain-containing protein | - |
| FKV26_RS13015 (FKV26_13400) | rsmD | 2860230..2860829 (-) | 600 | WP_001189766.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FKV26_RS13020 (FKV26_13405) | pilA | 2861033..2862202 (+) | 1170 | WP_000136718.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FKV26_RS13025 (FKV26_13410) | ftsE | 2862251..2862925 (+) | 675 | WP_000617864.1 | cell division ATP-binding protein FtsE | - |
| FKV26_RS13030 (FKV26_13415) | ftsX | 2862915..2863907 (+) | 993 | WP_000279340.1 | permease-like cell division protein FtsX | - |
| FKV26_RS13035 (FKV26_13420) | rpoH | 2864077..2864937 (+) | 861 | WP_000184359.1 | RNA polymerase sigma factor RpoH | - |
| FKV26_RS13040 (FKV26_13425) | sthA | 2865139..2866539 (-) | 1401 | WP_000529898.1 | Si-specific NAD(P)(+) transhydrogenase | - |
Sequence
Protein
Download Length: 389 a.a. Molecular weight: 42574.25 Da Isoelectric Point: 4.4974
>NTDB_id=331063 FKV26_RS13020 WP_000136718.1 2861033..2862202(+) (pilA) [Vibrio cholerae O1 strain AAS91]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETATVEPARIVEQE
KPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETATVEPARIVEQE
KPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
Nucleotide
Download Length: 1170 bp
>NTDB_id=331063 FKV26_RS13020 WP_000136718.1 2861033..2862202(+) (pilA) [Vibrio cholerae O1 strain AAS91]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAG
AAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGT
GATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCA
AGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGC
GCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGG
CGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAG
AAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGT
GATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCA
AGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGC
GCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGG
CGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54 |
77.121 |
0.416 |