Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   EJJ14_RS07990 Genome accession   NZ_CP034393
Coordinates   1523239..1523847 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain CLB104     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518239..1528847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ14_RS07965 (EJJ14_07965) - 1518396..1519160 (+) 765 WP_002851318.1 TIGR02757 family protein -
  EJJ14_RS07970 (EJJ14_07970) - 1519164..1519928 (+) 765 WP_002855821.1 TSUP family transporter -
  EJJ14_RS07975 (EJJ14_07975) ctsF 1519921..1521102 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  EJJ14_RS07980 (EJJ14_07980) ctsE 1521099..1522658 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  EJJ14_RS07985 (EJJ14_07985) ctsX 1522648..1523235 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  EJJ14_RS07990 (EJJ14_07990) ctsP 1523239..1523847 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EJJ14_RS07995 (EJJ14_07995) ctsD 1523840..1525258 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EJJ14_RS08000 (EJJ14_08000) ctsR 1525230..1525547 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=331063 EJJ14_RS07990 WP_002851464.1 1523239..1523847(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain CLB104]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=331063 EJJ14_RS07990 WP_002851464.1 1523239..1523847(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain CLB104]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment