Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   EJJ14_RS03345 Genome accession   NZ_CP034393
Coordinates   634626..635063 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain CLB104     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629626..640063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ14_RS09460 - 630238..631263 (+) 1026 WP_240694414.1 sensor histidine kinase KdpD -
  EJJ14_RS09465 - 631354..631938 (+) 585 WP_240681976.1 DUF4118 domain-containing protein -
  EJJ14_RS03330 (EJJ14_03330) uvrB 632040..634013 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  EJJ14_RS03335 (EJJ14_03335) - 634167..634397 (+) 231 WP_002852327.1 hypothetical protein -
  EJJ14_RS03340 (EJJ14_03340) - 634387..634629 (+) 243 WP_002854947.1 hypothetical protein -
  EJJ14_RS03345 (EJJ14_03345) Cj0683 634626..635063 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EJJ14_RS03350 (EJJ14_03350) priA 635045..636898 (+) 1854 WP_079460580.1 primosomal protein N' -
  EJJ14_RS03355 (EJJ14_03355) cipA 636908..638304 (-) 1397 Protein_649 DUF2972 domain-containing protein -
  EJJ14_RS03360 (EJJ14_03360) ispG 638450..639523 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=331047 EJJ14_RS03345 WP_002852324.1 634626..635063(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain CLB104]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=331047 EJJ14_RS03345 WP_002852324.1 634626..635063(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain CLB104]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment