Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EJH97_RS15090 Genome accession   NZ_CP034389
Coordinates   3073922..3074551 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RS571     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3068922..3079551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJH97_RS15075 (EJH97_15075) helD 3069164..3071218 (-) 2055 WP_022645482.1 DNA helicase IV -
  EJH97_RS15080 (EJH97_15080) yccF 3071341..3071787 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EJH97_RS15085 (EJH97_15085) yccS 3071797..3073959 (+) 2163 WP_000875041.1 YccS family putative transporter -
  EJH97_RS15090 (EJH97_15090) sxy/tfoX 3073922..3074551 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EJH97_RS15095 (EJH97_15095) sulA 3074770..3075279 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  EJH97_RS15100 (EJH97_15100) ompA 3075636..3076676 (+) 1041 WP_022645481.1 porin OmpA -
  EJH97_RS15105 (EJH97_15105) matP 3076753..3077205 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EJH97_RS15110 (EJH97_15110) ycbZ 3077391..3079151 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=331032 EJH97_RS15090 WP_000839153.1 3073922..3074551(-) (sxy/tfoX) [Escherichia coli strain RS571]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=331032 EJH97_RS15090 WP_000839153.1 3073922..3074551(-) (sxy/tfoX) [Escherichia coli strain RS571]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment