Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FKV26_RS02800 Genome accession   NZ_CP042299
Coordinates   631949..632551 (+) Length   200 a.a.
NCBI ID   WP_001260578.1    Uniprot ID   -
Organism   Vibrio cholerae O1 strain AAS91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626949..637551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV26_RS02775 (FKV26_02845) - 626970..628061 (+) 1092 WP_001911483.1 response regulator -
  FKV26_RS19250 (FKV26_02850) - 628231..628362 (+) 132 WP_000013199.1 hypothetical protein -
  FKV26_RS02780 (FKV26_02855) - 628362..628760 (+) 399 WP_001880857.1 YbaN family protein -
  FKV26_RS02785 (FKV26_02860) apt 628892..629437 (+) 546 WP_000206219.1 adenine phosphoribosyltransferase -
  FKV26_RS02790 (FKV26_02865) dnaX 629456..631534 (+) 2079 WP_000120797.1 DNA polymerase III subunit gamma/tau -
  FKV26_RS02795 (FKV26_02870) - 631605..631934 (+) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  FKV26_RS02800 (FKV26_02875) recR 631949..632551 (+) 603 WP_001260578.1 recombination mediator RecR Machinery gene
  FKV26_RS02805 (FKV26_02880) - 632661..632909 (-) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  FKV26_RS02810 (FKV26_02885) - 633047..633484 (+) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  FKV26_RS02815 (FKV26_02890) - 633578..634321 (-) 744 WP_001109956.1 YciK family oxidoreductase -
  FKV26_RS02820 (FKV26_02895) sohB 634480..635541 (+) 1062 WP_000394900.1 protease SohB -
  FKV26_RS02825 (FKV26_02900) - 635666..636733 (-) 1068 WP_000337335.1 PLP-dependent cysteine synthase family protein -
  FKV26_RS02830 (FKV26_02905) - 636858..637313 (+) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21871.04 Da        Isoelectric Point: 6.1558

>NTDB_id=331006 FKV26_RS02800 WP_001260578.1 631949..632551(+) (recR) [Vibrio cholerae O1 strain AAS91]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDMLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=331006 FKV26_RS02800 WP_001260578.1 631949..632551(+) (recR) [Vibrio cholerae O1 strain AAS91]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGCGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTTCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGCCCGAGCGATATTGGCCTCGATATGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44