Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FRV13_RS27265 Genome accession   NZ_CP042298
Coordinates   5114260..5115687 (-) Length   475 a.a.
NCBI ID   WP_073535728.1    Uniprot ID   -
Organism   Escherichia coli strain RM9088     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5109260..5120687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRV13_RS27235 (FRV13_27240) yeeZ 5109315..5110139 (+) 825 WP_001567684.1 SDR family oxidoreductase -
  FRV13_RS27240 (FRV13_27245) yeeY 5110185..5111114 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FRV13_RS27245 (FRV13_27250) yoeI 5111329..5111391 (+) 63 WP_010723108.1 membrane protein YoeI -
  FRV13_RS27250 (FRV13_27255) plaP 5111381..5112739 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FRV13_RS27255 (FRV13_27260) tsuA 5112918..5113976 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  FRV13_RS27260 (FRV13_27265) tsuB 5113990..5114217 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FRV13_RS27265 (FRV13_27270) sbcB 5114260..5115687 (-) 1428 WP_073535728.1 exodeoxyribonuclease I Machinery gene
  FRV13_RS27270 (FRV13_27275) dacD 5115896..5117062 (+) 1167 WP_047085011.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FRV13_RS27275 (FRV13_27280) sbmC 5117181..5117654 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  FRV13_RS27280 (FRV13_27285) yeeA 5117853..5118911 (+) 1059 WP_001200892.1 FUSC family protein -
  FRV13_RS27285 (FRV13_27290) tmaR 5119083..5119412 (+) 330 WP_047085010.1 DUF496 family protein -
  FRV13_RS28920 - 5119513..5119878 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FRV13_RS28590 - 5120150..5120539 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4700

>NTDB_id=330984 FRV13_RS27265 WP_073535728.1 5114260..5115687(-) (sbcB) [Escherichia coli strain RM9088]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=330984 FRV13_RS27265 WP_073535728.1 5114260..5115687(-) (sbcB) [Escherichia coli strain RM9088]
ATAATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585