Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FRV13_RS23770 Genome accession   NZ_CP042298
Coordinates   4386186..4386701 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM9088     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4381186..4391701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRV13_RS23725 (FRV13_23730) csrA 4381773..4381958 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FRV13_RS23755 (FRV13_23760) yqaB 4383416..4383982 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FRV13_RS23760 (FRV13_23765) yqaA 4383979..4384407 (+) 429 WP_001287454.1 YqaA family protein -
  FRV13_RS23765 (FRV13_23770) gshA 4384480..4386036 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  FRV13_RS23770 (FRV13_23775) luxS 4386186..4386701 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FRV13_RS23775 (FRV13_23780) emrB 4386765..4388303 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FRV13_RS23780 (FRV13_23785) emrA 4388320..4389492 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FRV13_RS23785 (FRV13_23790) emrR 4389619..4390149 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FRV13_RS23790 (FRV13_23795) ygaH 4390240..4390575 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  FRV13_RS23795 (FRV13_23800) ygaZ 4390565..4391302 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=330974 FRV13_RS23770 WP_001130211.1 4386186..4386701(+) (luxS) [Escherichia coli strain RM9088]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=330974 FRV13_RS23770 WP_001130211.1 4386186..4386701(+) (luxS) [Escherichia coli strain RM9088]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731