Detailed information NTG0330971

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FRV13_RS23500
• Genome accession: NZ_CP042298
• Coordinates: 4333366..4334358 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM9088
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4328366..4339358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FRV13_RS23470 (FRV13_23475)	ispD	4328427..4329137 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FRV13_RS23475 (FRV13_23480)	ispF	4329137..4329616 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FRV13_RS23480 (FRV13_23485)	truD	4329613..4330662 (+)	1050	WP_044863711.1	tRNA pseudouridine(13) synthase TruD	-
FRV13_RS23485 (FRV13_23490)	surE	4330643..4331404 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FRV13_RS23490 (FRV13_23495)	pcm	4331398..4332024 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FRV13_RS23495 (FRV13_23500)	nlpD	4332209..4333303 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FRV13_RS23500 (FRV13_23505)	rpoS	4333366..4334358 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FRV13_RS23505 (FRV13_23510)	ygbN	4334452..4335816 (-)	1365	WP_000104441.1	GntP family transporter	-
FRV13_RS23510 (FRV13_23515)	ygbM	4335905..4336681 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FRV13_RS23515 (FRV13_23520)	ygbL	4336686..4337324 (-)	639	WP_001278994.1	aldolase	-
FRV13_RS23520 (FRV13_23525)	otnK	4337321..4338583 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=330971 FRV13_RS23500 WP_000081550.1 4333366..4334358(+) (rpoS) [Escherichia coli strain RM9088]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=330971 FRV13_RS23500 WP_000081550.1 4333366..4334358(+) (rpoS) [Escherichia coli strain RM9088]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715