Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   C6567_RS07525 Genome accession   NZ_CP034349
Coordinates   1541278..1541724 (-) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 80wphwpl     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536278..1546724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6567_RS07495 (C6567_07495) gcvPA 1537204..1538550 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  C6567_RS07500 (C6567_07500) gcvT 1538570..1539661 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  C6567_RS07505 (C6567_07505) - 1539820..1540344 (-) 525 WP_001015125.1 shikimate kinase -
  C6567_RS07510 (C6567_07510) - 1540334..1540480 (-) 147 WP_001789879.1 hypothetical protein -
  C6567_RS07515 (C6567_07515) comGF 1540577..1541074 (-) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  C6567_RS07520 (C6567_07520) comGE 1540992..1541291 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  C6567_RS07525 (C6567_07525) comGD 1541278..1541724 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  C6567_RS07530 (C6567_07530) comGC 1541702..1542013 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  C6567_RS07535 (C6567_07535) comGB 1542027..1543097 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  C6567_RS07540 (C6567_07540) comGA 1543069..1544043 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  C6567_RS07545 (C6567_07545) - 1544095..1544718 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  C6567_RS07550 (C6567_07550) - 1544715..1545044 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  C6567_RS07555 (C6567_07555) - 1545044..1546030 (-) 987 WP_000161314.1 ROK family glucokinase -
  C6567_RS07560 (C6567_07560) - 1546027..1546230 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=330862 C6567_RS07525 WP_001791207.1 1541278..1541724(-) (comGD) [Staphylococcus aureus strain 80wphwpl]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=330862 C6567_RS07525 WP_001791207.1 1541278..1541724(-) (comGD) [Staphylococcus aureus strain 80wphwpl]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment