Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPC_RS07420 Genome accession   NC_014555
Coordinates   1540066..1540332 (+) Length   88 a.a.
NCBI ID   WP_001173701.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535066..1545332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS07390 (HPPC_07660) - 1535579..1536286 (-) 708 WP_001106879.1 Fic family protein -
  HPPC_RS07395 (HPPC_07665) - 1536409..1536828 (-) 420 Protein_1441 CAAX protease -
  HPPC_RS07400 (HPPC_07670) - 1537141..1537920 (+) 780 WP_001209224.1 hypothetical protein -
  HPPC_RS07405 (HPPC_07675) - 1537940..1538233 (+) 294 WP_001160307.1 hypothetical protein -
  HPPC_RS07410 (HPPC_07680) - 1538240..1539766 (+) 1527 WP_000323321.1 hypothetical protein -
  HPPC_RS07415 (HPPC_07685) - 1539763..1540065 (+) 303 WP_001964151.1 hypothetical protein -
  HPPC_RS07420 (HPPC_07690) comB3 1540066..1540332 (+) 267 WP_001173701.1 hypothetical protein Machinery gene
  HPPC_RS07425 (HPPC_07695) comB4 1540379..1542748 (+) 2370 WP_000657146.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPC_RS07430 (HPPC_07700) - 1542751..1544784 (+) 2034 WP_000655390.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10135.95 Da        Isoelectric Point: 4.8782

>NTDB_id=33081 HPPC_RS07420 WP_001173701.1 1540066..1540332(+) (comB3) [Helicobacter pylori PeCan4]
MALHIVCVESINIREISKRETFLGLNLDSWIVGFLMSAWLLSFQPIYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGTRSYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=33081 HPPC_RS07420 WP_001173701.1 1540066..1540332(+) (comB3) [Helicobacter pylori PeCan4]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTGAACTT
GGATAGTTGGATTGTCGGTTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCAATTTATGCTATGGGCTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCACGCGCTTTTCACCTTAAGA
ACAGGAACTAGAAGTTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386

Multiple sequence alignment