Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EJA05_RS25970 Genome accession   NZ_CP034338
Coordinates   5581843..5582244 (-) Length   133 a.a.
NCBI ID   WP_110994149.1    Uniprot ID   -
Organism   Pseudomonas oryziphila strain 1257     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5576843..5587244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJA05_RS25955 (EJA05_25955) - 5578805..5580829 (-) 2025 WP_258705249.1 methyl-accepting chemotaxis protein -
  EJA05_RS25960 (EJA05_25960) - 5580878..5581432 (-) 555 WP_125465834.1 chemotaxis protein CheW -
  EJA05_RS25965 (EJA05_25965) pilH 5581429..5581794 (-) 366 WP_110994150.1 twitching motility response regulator PilH -
  EJA05_RS25970 (EJA05_25970) pilG 5581843..5582244 (-) 402 WP_110994149.1 twitching motility response regulator PilG Regulator
  EJA05_RS25975 (EJA05_25975) gshB 5582488..5583441 (+) 954 WP_125860771.1 glutathione synthase -
  EJA05_RS25980 (EJA05_25980) - 5583589..5584488 (+) 900 WP_125465836.1 energy transducer TonB -
  EJA05_RS25985 (EJA05_25985) - 5584655..5585224 (+) 570 WP_125465837.1 YqgE/AlgH family protein -
  EJA05_RS25990 (EJA05_25990) ruvX 5585224..5585649 (+) 426 WP_110994144.1 Holliday junction resolvase RuvX -
  EJA05_RS25995 (EJA05_25995) pyrR 5585701..5586219 (+) 519 WP_125860773.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  EJA05_RS26000 (EJA05_26000) - 5586232..5587236 (+) 1005 WP_110994142.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14679.04 Da        Isoelectric Point: 6.7121

>NTDB_id=330798 EJA05_RS25970 WP_110994149.1 5581843..5582244(-) (pilG) [Pseudomonas oryziphila strain 1257]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIIDHKPRIIFVDVLMPRLDGYQTCALIKHNSAYKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAQDPIAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=330798 EJA05_RS25970 WP_110994149.1 5581843..5582244(-) (pilG) [Pseudomonas oryziphila strain 1257]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCGCGCACGATCCGCCGCACTGCCCAGATGTTGCTCGGCGAGGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGTTTCGACGCCCTCGCCAAGATCATCGACCACAAGCCGCGGATCATCTTCG
TCGATGTGCTCATGCCACGCCTGGACGGCTACCAGACCTGCGCACTGATCAAGCACAACAGCGCCTACAAGGACACCCCG
GTGATTCTGCTTTCTTCCCGCGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
ACCTTTCAGCAAGGAAGAACTGCTCGACGCAATCCGCGCCCATGTGCCCGGTTTCGCCGCGCAGGACCCAATCGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.667

90.226

0.647

Multiple sequence alignment