Detailed information NTG0330796

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FQ758_RS08095
• Genome accession: NZ_CP042269
• Coordinates: 1505468..1506472 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HOU1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1500468..1511472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQ758_RS08065 (FQ758_08060)	fghA	1500560..1501411 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
FQ758_RS08070 (FQ758_08065)	ispF	1501482..1501955 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FQ758_RS08075 (FQ758_08070)	truD	1501952..1503019 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
FQ758_RS08080 (FQ758_08075)	surE	1503007..1503756 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FQ758_RS08085 (FQ758_08080)	-	1503789..1504424 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FQ758_RS08090 (FQ758_08085)	-	1504470..1505363 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
FQ758_RS08095 (FQ758_08090)	rpoS	1505468..1506472 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FQ758_RS08100 (FQ758_08095)	fdxA	1506898..1507221 (-)	324	WP_003092272.1	ferredoxin FdxA	-
FQ758_RS08105 (FQ758_08100)	mutS	1507288..1509855 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
FQ758_RS08115 (FQ758_08110)	-	1509981..1510988 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=330796 FQ758_RS08095 WP_003113871.1 1505468..1506472(+) (rpoS) [Pseudomonas aeruginosa strain HOU1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=330796 FQ758_RS08095 WP_003113871.1 1505468..1506472(+) (rpoS) [Pseudomonas aeruginosa strain HOU1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653