Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FQB22_RS17365 Genome accession   NZ_CP042252
Coordinates   3386269..3386631 (+) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain KNU11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3381269..3391631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS17335 flgD 3382113..3382580 (+) 468 WP_003181782.1 flagellar hook assembly protein FlgD -
  FQB22_RS17340 flgG 3382608..3383399 (+) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  FQB22_RS17345 - 3383442..3383657 (+) 216 WP_003181786.1 flagellar FlbD family protein -
  FQB22_RS17350 fliL 3383654..3384085 (+) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  FQB22_RS17355 fliM 3384121..3385119 (+) 999 WP_003181789.1 flagellar motor switch protein FliM -
  FQB22_RS17360 fliY 3385109..3386242 (+) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  FQB22_RS17365 pilH 3386269..3386631 (+) 363 WP_003181796.1 response regulator Machinery gene
  FQB22_RS17370 fliZ 3386644..3387318 (+) 675 WP_009328513.1 flagella biosynthesis regulatory protein FliZ -
  FQB22_RS17375 fliP 3387311..3387976 (+) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  FQB22_RS17380 fliQ 3387992..3388261 (+) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  FQB22_RS17385 fliR 3388269..3389045 (+) 777 WP_011197977.1 flagellar biosynthetic protein FliR -
  FQB22_RS17390 flhB 3389045..3390124 (+) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=330746 FQB22_RS17365 WP_003181796.1 3386269..3386631(+) (pilH) [Bacillus licheniformis strain KNU11]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=330746 FQB22_RS17365 WP_003181796.1 3386269..3386631(+) (pilH) [Bacillus licheniformis strain KNU11]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375