Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FQB22_RS17175 Genome accession   NZ_CP042252
Coordinates   3353184..3354170 (+) Length   328 a.a.
NCBI ID   WP_003181713.1    Uniprot ID   Q65JQ3
Organism   Bacillus licheniformis strain KNU11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3348184..3359170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS17160 acpP 3348383..3348616 (+) 234 WP_003181706.1 acyl carrier protein -
  FQB22_RS17165 rnc 3348758..3349507 (+) 750 WP_009328527.1 ribonuclease III -
  FQB22_RS17170 smc 3349607..3353167 (+) 3561 WP_011197972.1 chromosome segregation protein SMC -
  FQB22_RS17175 pilA 3353184..3354170 (+) 987 WP_003181713.1 signal recognition particle-docking protein FtsY Machinery gene
  FQB22_RS17180 - 3354304..3354627 (+) 324 WP_009328526.1 putative DNA-binding protein -
  FQB22_RS17185 ffh 3354643..3355983 (+) 1341 WP_003181717.1 signal recognition particle protein -
  FQB22_RS17190 rpsP 3356091..3356363 (+) 273 WP_003181719.1 30S ribosomal protein S16 -
  FQB22_RS17195 - 3356363..3356608 (+) 246 WP_003181721.1 KH domain-containing protein -
  FQB22_RS17200 - 3356746..3357132 (+) 387 WP_003181722.1 YlqD family protein -
  FQB22_RS17205 rimM 3357137..3357661 (+) 525 WP_003181725.1 ribosome maturation factor RimM -
  FQB22_RS17210 trmD 3357658..3358389 (+) 732 WP_003181726.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FQB22_RS17215 rplS 3358528..3358875 (+) 348 WP_003181728.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36247.39 Da        Isoelectric Point: 4.8125

>NTDB_id=330743 FQB22_RS17175 WP_003181713.1 3353184..3354170(+) (pilA) [Bacillus licheniformis strain KNU11]
MSFFKKLKEKITQQTDSVSGKFKEGLAKTRNTFQERVNELVSRYRKVDEDFFEELEEVLIGADVGVATVMELIDELKSEV
KRRNIQDPKEVQSVISEKLVEIYEGGEQEASELRVEDGRLNIILFVGVNGVGKTTTIGKLAHQFIKEGKNVVLAAGDTFR
AGAIDQLEVWGERVGAHVVKQAEGSDPAAVIYDAVQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIQREVPDAPH
EVLLVLDATTGQNAMTQAREFSKATDVSGIVLTKLDGTAKGGIVLAIRHELQIPVKFVGLGEKMDDLQPFEAESYVYGLF
SDLIEKEE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=330743 FQB22_RS17175 WP_003181713.1 3353184..3354170(+) (pilA) [Bacillus licheniformis strain KNU11]
ATGAGCTTTTTTAAAAAACTGAAAGAAAAAATCACACAGCAGACCGATTCGGTCTCAGGCAAATTTAAAGAAGGCCTGGC
GAAAACGAGAAATACGTTTCAGGAGCGGGTCAATGAGCTTGTCTCCCGCTACCGGAAAGTGGACGAGGATTTTTTTGAAG
AGCTTGAAGAGGTTCTGATCGGCGCTGATGTCGGCGTTGCGACTGTTATGGAGCTGATTGACGAGCTGAAGAGCGAGGTC
AAGCGAAGAAATATTCAGGACCCGAAAGAGGTGCAGTCCGTCATTTCTGAAAAGCTCGTTGAAATCTATGAAGGCGGGGA
GCAGGAAGCATCAGAGCTCCGCGTCGAAGACGGCCGCCTAAACATCATTTTATTCGTCGGCGTCAACGGCGTCGGCAAAA
CGACGACGATCGGCAAGCTTGCCCATCAATTCATTAAAGAAGGCAAAAATGTCGTTCTTGCTGCCGGAGATACATTCAGG
GCCGGCGCGATCGACCAGCTTGAAGTGTGGGGAGAGCGCGTCGGCGCGCATGTCGTCAAACAGGCGGAAGGCTCGGATCC
TGCGGCTGTTATCTATGACGCCGTTCAAGCCGCGAAAGCGCGCGGCGCCGATGTCCTGCTTTGCGACACGGCAGGACGCC
TGCAAAATAAAGTGAACTTAATGAAAGAGCTAGAAAAGGTAAAGCGCGTGATTCAGCGCGAAGTGCCTGATGCGCCTCAT
GAAGTGCTGCTCGTACTGGATGCGACGACAGGGCAGAACGCAATGACACAGGCGCGCGAATTTTCCAAAGCGACTGATGT
CTCAGGCATCGTGCTGACGAAGCTCGACGGAACGGCAAAAGGCGGCATCGTCCTCGCCATCCGCCATGAGCTGCAGATTC
CGGTCAAGTTTGTCGGGCTGGGGGAAAAAATGGATGACCTGCAGCCGTTTGAAGCAGAGTCATATGTATACGGCCTGTTT
TCCGATCTGATCGAGAAAGAAGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(121-320)

SRP54-type protein, helical bundle domain (SRP54_N)

(34-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.04

92.073

0.405