Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FQB22_RS12205 Genome accession   NZ_CP042252
Coordinates   2412943..2413659 (+) Length   238 a.a.
NCBI ID   WP_003179748.1    Uniprot ID   -
Organism   Bacillus licheniformis strain KNU11     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2407943..2418659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS12190 - 2408145..2409557 (+) 1413 WP_003179741.1 alanine/glycine:cation symporter family protein -
  FQB22_RS12195 treP 2409747..2411159 (+) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  FQB22_RS12200 treC 2411233..2412921 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  FQB22_RS12205 treR 2412943..2413659 (+) 717 WP_003179748.1 trehalose operon repressor Regulator
  FQB22_RS12210 - 2413766..2414458 (+) 693 WP_003179750.1 N-acetyltransferase -
  FQB22_RS12215 - 2414585..2415847 (+) 1263 WP_016886284.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27733.55 Da        Isoelectric Point: 5.8721

>NTDB_id=330703 FQB22_RS12205 WP_003179748.1 2412943..2413659(+) (treR) [Bacillus licheniformis strain KNU11]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYLIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=330703 FQB22_RS12205 WP_003179748.1 2412943..2413659(+) (treR) [Bacillus licheniformis strain KNU11]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATCTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416

Multiple sequence alignment