Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   FQB22_RS08450 Genome accession   NZ_CP042252
Coordinates   1653745..1653975 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain KNU11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1648745..1658975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS08420 ridA 1648802..1649179 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  FQB22_RS08425 spoVG 1649359..1649652 (+) 294 WP_003178198.1 septation regulator SpoVG -
  FQB22_RS08430 glmU 1649957..1651327 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  FQB22_RS08435 - 1651348..1652298 (+) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  FQB22_RS08440 - 1652379..1653005 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  FQB22_RS08445 pth 1653122..1653688 (+) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  FQB22_RS08450 subA/fin 1653745..1653975 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  FQB22_RS08455 mfd 1654040..1657573 (+) 3534 WP_011197468.1 transcription-repair coupling factor -
  FQB22_RS08460 spoVT 1657711..1658247 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=330689 FQB22_RS08450 WP_003178210.1 1653745..1653975(+) (subA/fin) [Bacillus licheniformis strain KNU11]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=330689 FQB22_RS08450 WP_003178210.1 1653745..1653975(+) (subA/fin) [Bacillus licheniformis strain KNU11]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776