Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPPC_RS03815 Genome accession   NC_014555
Coordinates   807285..808805 (-) Length   506 a.a.
NCBI ID   WP_000611084.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802285..813805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS03805 (HPPC_03985) - 803877..805151 (-) 1275 WP_000548860.1 restriction endonuclease subunit S -
  HPPC_RS03810 (HPPC_03990) - 805200..807260 (-) 2061 WP_001158810.1 heavy metal translocating P-type ATPase -
  HPPC_RS03815 (HPPC_03995) comM 807285..808805 (-) 1521 WP_000611084.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPPC_RS03820 (HPPC_04000) def 808808..809335 (-) 528 WP_001185881.1 peptide deformylase -
  HPPC_RS03825 (HPPC_04005) clpP 809340..809927 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPPC_RS03830 (HPPC_04010) tig 809948..811303 (-) 1356 WP_001047776.1 trigger factor -
  HPPC_RS03835 (HPPC_04015) - 811416..812263 (-) 848 Protein_754 outer membrane protein -
  HPPC_RS03840 (HPPC_04020) hpaA 812296..813078 (-) 783 WP_000646640.1 flagellar sheath lipoprotein HpaA -
  HPPC_RS03845 (HPPC_04025) moaC 813191..813667 (-) 477 WP_001131577.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57316.36 Da        Isoelectric Point: 8.2333

>NTDB_id=33068 HPPC_RS03815 WP_000611084.1 807285..808805(-) (comM) [Helicobacter pylori PeCan4]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIF

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=33068 HPPC_RS03815 WP_000611084.1 807285..808805(-) (comM) [Helicobacter pylori PeCan4]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGGTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCCAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTAGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACAAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTACCTCCCTTAAGCCTGAATGAAATCCTAGAAGCAACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCTAGCATTTTAGGCTCAAGCTCTCTCA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CACAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTTTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.228

99.802

0.97
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment