Detailed information NTG0330639

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: D8X56_RS07280
• Genome accession: NZ_CP034314
• Coordinates: 1482432..1483871 (+)
• Length: 479 a.a.
• NCBI ID: WP_125303416.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP42K
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1477432..1488871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8X56_RS07260 (D8X56_07260)	glmS	1478065..1479858 (-)	1794	WP_125303407.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
D8X56_RS07265 (D8X56_07265)	-	1479859..1480098 (-)	240	WP_000461837.1	DUF2443 domain-containing protein	-
D8X56_RS07270 (D8X56_07270)	-	1480141..1480683 (-)	543	WP_125303409.1	purine-nucleoside phosphorylase	-
D8X56_RS07275 (D8X56_07275)	dnaA	1480836..1482203 (+)	1368	WP_125303413.1	chromosomal replication initiator protein DnaA	-
D8X56_RS07280 (D8X56_07280)	comH	1482432..1483871 (+)	1440	WP_125303416.1	competence protein	Machinery gene
D8X56_RS07290 (D8X56_07290)	-	1484051..1484803 (+)	753	WP_120907849.1	exodeoxyribonuclease III	-
D8X56_RS07295 (D8X56_07295)	-	1484800..1485435 (-)	636	WP_125303419.1	outer membrane protein	-
D8X56_RS07300 (D8X56_07300)	-	1485439..1485792 (-)	354	WP_000837019.1	hypothetical protein	-
D8X56_RS07305 (D8X56_07305)	recG	1485874..1487745 (+)	1872	WP_125303422.1	ATP-dependent DNA helicase RecG	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54879.79 Da
• Isoelectric Point: 6.8742

>NTDB_id=330639 D8X56_RS07280 WP_125303416.1 1482432..1483871(+) (comH) [Helicobacter pylori strain HP42K]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
VTPSKISPTNETQTPTNNTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADINENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=330639 D8X56_RS07280 WP_125303416.1 1482432..1483871(+) (comH) [Helicobacter pylori strain HP42K]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAACCTCCTCAAAACTTTTCTTATCCAGAGCCCAAACTAGGCTCTAAAAACTCCAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCCACTAACGAAACTCAAACGCCAACAAACAACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
ATGAAAACAATGAAAGCAATGAAAATAAGGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATATTAAAGAATTTGCG
TGCGGAAAGTGGGTCTATGACGATGAAAACTTGCAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCTTATACCAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCCAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGTGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	96.451	100	0.965