Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   D8X56_RS06880 Genome accession   NZ_CP034314
Coordinates   1400191..1401504 (-) Length   437 a.a.
NCBI ID   WP_164504018.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395191..1406504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS06850 (D8X56_06850) nadC 1395656..1396477 (-) 822 WP_125303267.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D8X56_RS06855 (D8X56_06855) nadA 1396477..1397487 (-) 1011 WP_125303270.1 quinolinate synthase NadA -
  D8X56_RS06860 (D8X56_06860) - 1397477..1398280 (-) 804 WP_125303273.1 phosphatidylserine decarboxylase -
  D8X56_RS06865 (D8X56_06865) - 1398274..1398780 (-) 507 WP_125303276.1 helix-turn-helix domain-containing protein -
  D8X56_RS06870 (D8X56_06870) - 1398793..1399287 (-) 495 WP_125303279.1 hypothetical protein -
  D8X56_RS06875 (D8X56_06875) mqnP 1399280..1400164 (-) 885 WP_125303282.1 menaquinone biosynthesis prenyltransferase MqnP -
  D8X56_RS06880 (D8X56_06880) comEC/comE3 1400191..1401504 (-) 1314 WP_164504018.1 ComEC/Rec2 family competence protein Machinery gene
  D8X56_RS06885 (D8X56_06885) - 1401501..1402967 (-) 1467 WP_125303285.1 replicative DNA helicase -
  D8X56_RS06890 (D8X56_06890) - 1402978..1404372 (-) 1395 WP_125303286.1 NAD(P)H-hydrate dehydratase -
  D8X56_RS06895 (D8X56_06895) crdS 1404375..1405577 (-) 1203 WP_125303287.1 copper-sensing histidine kinase CrdS -
  D8X56_RS06900 (D8X56_06900) crdR 1405543..1406184 (-) 642 WP_078270372.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50314.29 Da        Isoelectric Point: 9.9068

>NTDB_id=330637 D8X56_RS06880 WP_164504018.1 1400191..1401504(-) (comEC/comE3) [Helicobacter pylori strain HP42K]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKDLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKHNFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRLLSMPLTIPTISIPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=330637 D8X56_RS06880 WP_164504018.1 1400191..1401504(-) (comEC/comE3) [Helicobacter pylori strain HP42K]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATTTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAGACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTACTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTGGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCGTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAACGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment