Detailed information NTG0330630

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D8X56_RS02390
• Genome accession: NZ_CP034314
• Coordinates: 480305..481507 (-)
• Length: 400 a.a.
• NCBI ID: WP_125301826.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP42K
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475305..486507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8X56_RS02365 (D8X56_02365)	-	475328..475846 (-)	519	WP_125301818.1	replication regulatory RepB family protein	-
D8X56_RS02370 (D8X56_02370)	-	475843..476787 (-)	945	WP_125301821.1	CpaF/VirB11 family protein	-
D8X56_RS02375 (D8X56_02375)	-	476792..477064 (-)	273	WP_206426566.1	hypothetical protein	-
D8X56_RS02380 (D8X56_02380)	-	477082..478059 (-)	978	WP_053575751.1	hypothetical protein	-
D8X56_RS02385 (D8X56_02385)	-	478072..480321 (-)	2250	WP_125303679.1	collagen-like protein	-
D8X56_RS02390 (D8X56_02390)	comB10	480305..481507 (-)	1203	WP_125301826.1	DNA type IV secretion system protein ComB10	Machinery gene
D8X56_RS02395 (D8X56_02395)	-	481504..483159 (-)	1656	WP_125301827.1	TrbG/VirB9 family P-type conjugative transfer protein	-
D8X56_RS02400 (D8X56_02400)	-	483156..484331 (-)	1176	WP_125301830.1	VirB8/TrbF family protein	-
D8X56_RS08180 (D8X56_02405)	-	484324..484464 (-)	141	WP_050834008.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44698.35 Da
• Isoelectric Point: 9.9018

>NTDB_id=330630 D8X56_RS02390 WP_125301826.1 480305..481507(-) (comB10) [Helicobacter pylori strain HP42K]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNDEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=330630 D8X56_RS02390 WP_125301826.1 480305..481507(-) (comB10) [Helicobacter pylori strain HP42K]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCCATTTCTAGCCAGATCGCTGGTAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTACAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGCCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATGATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.435	98.25	0.525