Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FQU84_RS17220 Genome accession   NZ_CP042250
Coordinates   3082728..3084155 (+) Length   475 a.a.
NCBI ID   WP_072656990.1    Uniprot ID   -
Organism   Escherichia coli strain BCE049     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3077728..3089155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU84_RS17180 (FQU84_17180) yeeW 3077922..3078116 (+) 195 WP_122991301.1 DUF5983 family protein -
  FQU84_RS17185 (FQU84_17185) - 3078162..3078242 (+) 81 Protein_2977 hypothetical protein -
  FQU84_RS17190 (FQU84_17190) - 3078531..3078677 (-) 147 Protein_2978 transposase domain-containing protein -
  FQU84_RS17195 (FQU84_17195) - 3078731..3078913 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FQU84_RS17200 (FQU84_17200) tmaR 3079014..3079343 (-) 330 WP_000450409.1 DUF496 family protein -
  FQU84_RS17205 (FQU84_17205) yeeA 3079515..3080573 (-) 1059 WP_097501768.1 FUSC family protein -
  FQU84_RS17210 (FQU84_17210) sbmC 3080771..3081244 (-) 474 WP_001105408.1 DNA gyrase inhibitor SbmC -
  FQU84_RS17215 (FQU84_17215) dacD 3081363..3082519 (-) 1157 Protein_2983 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FQU84_RS17220 (FQU84_17220) sbcB 3082728..3084155 (+) 1428 WP_072656990.1 exodeoxyribonuclease I Machinery gene
  FQU84_RS17225 (FQU84_17225) plaP 3084229..3085587 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FQU84_RS17230 (FQU84_17230) yoeI 3085577..3085639 (-) 63 WP_010723108.1 membrane protein YoeI -
  FQU84_RS17235 (FQU84_17235) yeeY 3085854..3086783 (-) 930 WP_097501769.1 LysR substrate-binding domain-containing protein -
  FQU84_RS17240 (FQU84_17240) yeeZ 3086829..3087653 (-) 825 WP_145768638.1 SDR family oxidoreductase -
  FQU84_RS17245 (FQU84_17245) yoeB 3087736..3087990 (-) 255 WP_089580013.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  FQU84_RS17250 (FQU84_17250) yefM 3087987..3088238 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  FQU84_RS17255 (FQU84_17255) hisL 3088521..3088571 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54421.72 Da        Isoelectric Point: 5.4700

>NTDB_id=330600 FQU84_RS17220 WP_072656990.1 3082728..3084155(+) (sbcB) [Escherichia coli strain BCE049]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVIYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=330600 FQU84_RS17220 WP_072656990.1 3082728..3084155(+) (sbcB) [Escherichia coli strain BCE049]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCATTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585