Detailed information NTG0330599

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EHC68_RS15875
• Genome accession: NZ_CP034305
• Coordinates: 3181569..3182576 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 20151116002-3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3176569..3187576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC68_RS15850 (EHC68_16105)	rplC	3177103..3177732 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
EHC68_RS15855 (EHC68_16110)	rpsJ	3177747..3178058 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
EHC68_RS15860 (EHC68_16115)	rpmE	3178516..3178737 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
EHC68_RS15870 (EHC68_16125)	priA	3179032..3181236 (+)	2205	WP_108744570.1	primosomal protein N'	-
EHC68_RS15875 (EHC68_16130)	cytR	3181569..3182576 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
EHC68_RS15880 (EHC68_16135)	ftsN	3182753..3183298 (+)	546	WP_005481405.1	cell division protein FtsN	-
EHC68_RS15885 (EHC68_16140)	hslV	3183463..3184014 (+)	552	WP_108744571.1	ATP-dependent protease subunit HslV	-
EHC68_RS15890 (EHC68_16145)	hslU	3184038..3185369 (+)	1332	WP_108744572.1	HslU--HslV peptidase ATPase subunit	-
EHC68_RS15895 (EHC68_16150)	-	3185794..3186018 (-)	225	WP_029864913.1	hypothetical protein	-
EHC68_RS15900 (EHC68_16155)	-	3186178..3186327 (-)	150	WP_108744573.1	AlpA family phage regulatory protein	-
EHC68_RS15905 (EHC68_16160)	radC	3186498..3186971 (+)	474	WP_053317965.1	RadC family protein	-
EHC68_RS15910 (EHC68_16165)	-	3186968..3187399 (+)	432	WP_029864910.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=330599 EHC68_RS15875 WP_005481416.1 3181569..3182576(+) (cytR) [Vibrio parahaemolyticus strain 20151116002-3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=330599 EHC68_RS15875 WP_005481416.1 3181569..3182576(+) (cytR) [Vibrio parahaemolyticus strain 20151116002-3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTACACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTGTTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904