Detailed information NTG0330577

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EHC68_RS03010
• Genome accession: NZ_CP034305
• Coordinates: 579249..580238 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20151116002-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 574249..585238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC68_RS02975 (EHC68_03010)	ftsB	574257..574538 (+)	282	WP_005455577.1	cell division protein FtsB	-
EHC68_RS02980 (EHC68_03015)	ispD	574540..575244 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EHC68_RS02985 (EHC68_03020)	ispF	575262..575738 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EHC68_RS02990 (EHC68_03025)	truD	575785..576828 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
EHC68_RS02995 (EHC68_03030)	surE	576828..577604 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
EHC68_RS03000 (EHC68_03035)	-	577604..578230 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EHC68_RS03005 (EHC68_03040)	-	578245..579168 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
EHC68_RS03010 (EHC68_03045)	rpoS	579249..580238 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EHC68_RS03015 (EHC68_03050)	mutS	580318..582879 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
EHC68_RS03020 (EHC68_03055)	pncC	582964..583446 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
EHC68_RS03025 (EHC68_03060)	recA	583647..584690 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=330577 EHC68_RS03010 WP_005478537.1 579249..580238(+) (rpoS) [Vibrio parahaemolyticus strain 20151116002-3]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=330577 EHC68_RS03010 WP_005478537.1 579249..580238(+) (rpoS) [Vibrio parahaemolyticus strain 20151116002-3]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851