Detailed information NTG0330574

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FQU84_RS06975
• Genome accession: NZ_CP042250
• Coordinates: 1075014..1076006 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BCE049
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070014..1081006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQU84_RS06945 (FQU84_06945)	ispD	1070075..1070785 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FQU84_RS06950 (FQU84_06950)	ispF	1070785..1071264 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FQU84_RS06955 (FQU84_06955)	truD	1071261..1072310 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
FQU84_RS06960 (FQU84_06960)	surE	1072291..1073052 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FQU84_RS06965 (FQU84_06965)	pcm	1073046..1073672 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
FQU84_RS06970 (FQU84_06970)	nlpD	1073857..1074951 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FQU84_RS06975 (FQU84_06975)	rpoS	1075014..1076006 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FQU84_RS06980 (FQU84_06980)	-	1076184..1076735 (-)	552	WP_001179442.1	flavodoxin family protein	-
FQU84_RS06985 (FQU84_06985)	-	1076960..1078003 (+)	1044	WP_001161577.1	MBL fold metallo-hydrolase	-
FQU84_RS06990 (FQU84_06990)	ygbN	1078146..1079510 (-)	1365	WP_000104443.1	GntP family transporter	-
FQU84_RS06995 (FQU84_06995)	ygbM	1079599..1080375 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=330574 FQU84_RS06975 WP_000081550.1 1075014..1076006(+) (rpoS) [Escherichia coli strain BCE049]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=330574 FQU84_RS06975 WP_000081550.1 1075014..1076006(+) (rpoS) [Escherichia coli strain BCE049]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715