Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EHC69_RS25680 Genome accession   NZ_CP034299
Coordinates   1758806..1759987 (+) Length   393 a.a.
NCBI ID   WP_114868167.1    Uniprot ID   A0A7Z2MYC6
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753806..1764987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS25665 (EHC69_25945) - 1754073..1756301 (+) 2229 WP_069548032.1 M9 family metallopeptidase -
  EHC69_RS25670 (EHC69_25950) - 1756481..1757218 (+) 738 WP_025638121.1 EAL domain-containing protein -
  EHC69_RS25675 (EHC69_25955) ylqF 1757508..1758452 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  EHC69_RS25680 (EHC69_25960) cqsA 1758806..1759987 (+) 1182 WP_114868167.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EHC69_RS25685 (EHC69_25965) cqsS 1760065..1762113 (-) 2049 WP_029803182.1 response regulator Regulator
  EHC69_RS25690 (EHC69_25970) - 1762433..1763050 (+) 618 WP_005481262.1 HAD family phosphatase -
  EHC69_RS25695 (EHC69_25975) - 1763136..1763684 (-) 549 WP_015313129.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43868.19 Da        Isoelectric Point: 6.4984

>NTDB_id=330563 EHC69_RS25680 WP_114868167.1 1758806..1759987(+) (cqsA) [Vibrio parahaemolyticus strain 20160303005-1]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPDFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADVKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=330563 EHC69_RS25680 WP_114868167.1 1758806..1759987(+) (cqsA) [Vibrio parahaemolyticus strain 20160303005-1]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGACTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCAGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTGGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGTCAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575

Multiple sequence alignment