Detailed information NTG0330544

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EHC69_RS14265
• Genome accession: NZ_CP034298
• Coordinates: 2877842..2878831 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20160303005-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2872842..2883831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC69_RS14250 (EHC69_14410)	recA	2873394..2874434 (-)	1041	WP_025789425.1	recombinase RecA	Machinery gene
EHC69_RS14255 (EHC69_14415)	pncC	2874635..2875117 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
EHC69_RS14260 (EHC69_14420)	mutS	2875202..2877763 (+)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
EHC69_RS14265 (EHC69_14425)	rpoS	2877842..2878831 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EHC69_RS14270 (EHC69_14430)	-	2878912..2879835 (-)	924	WP_069540980.1	peptidoglycan DD-metalloendopeptidase family protein	-
EHC69_RS14275 (EHC69_14435)	-	2879850..2880476 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EHC69_RS14280 (EHC69_14440)	surE	2880476..2881252 (-)	777	WP_017449149.1	5'/3'-nucleotidase SurE	-
EHC69_RS14285 (EHC69_14445)	truD	2881252..2882295 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
EHC69_RS14290 (EHC69_14450)	ispF	2882342..2882818 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EHC69_RS14295 (EHC69_14455)	ispD	2882836..2883540 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EHC69_RS14300 (EHC69_14460)	ftsB	2883542..2883823 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=330544 EHC69_RS14265 WP_005478537.1 2877842..2878831(-) (rpoS) [Vibrio parahaemolyticus strain 20160303005-1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=330544 EHC69_RS14265 WP_005478537.1 2877842..2878831(-) (rpoS) [Vibrio parahaemolyticus strain 20160303005-1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGATGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851