Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EHC69_RS06955 Genome accession   NZ_CP034298
Coordinates   1422286..1423707 (-) Length   473 a.a.
NCBI ID   WP_114867474.1    Uniprot ID   A0A7Z2MR44
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1417286..1428707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS06930 (EHC69_06970) - 1417850..1418500 (+) 651 WP_021486580.1 thiopurine S-methyltransferase -
  EHC69_RS06935 (EHC69_06975) purT 1418602..1419777 (-) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  EHC69_RS06940 (EHC69_06980) cdd 1419925..1420812 (-) 888 WP_020840481.1 cytidine deaminase -
  EHC69_RS06945 (EHC69_06985) - 1421177..1421854 (-) 678 WP_024701131.1 LrgB family protein -
  EHC69_RS06950 (EHC69_06990) - 1421856..1422230 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  EHC69_RS06955 (EHC69_06995) sbcB 1422286..1423707 (-) 1422 WP_114867474.1 exodeoxyribonuclease I Machinery gene
  EHC69_RS06960 (EHC69_07000) - 1423694..1423882 (-) 189 WP_140418980.1 hypothetical protein -
  EHC69_RS06965 (EHC69_07005) - 1423863..1425236 (-) 1374 WP_074544367.1 L-cystine transporter -
  EHC69_RS06970 (EHC69_07010) - 1425429..1426124 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  EHC69_RS06975 (EHC69_07015) cobT 1426808..1427851 (+) 1044 WP_114867475.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  EHC69_RS06980 (EHC69_07020) - 1427896..1428648 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54601.92 Da        Isoelectric Point: 4.9813

>NTDB_id=330532 EHC69_RS06955 WP_114867474.1 1422286..1423707(-) (sbcB) [Vibrio parahaemolyticus strain 20160303005-1]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSVERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=330532 EHC69_RS06955 WP_114867474.1 1422286..1423707(-) (sbcB) [Vibrio parahaemolyticus strain 20160303005-1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATCTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTGTCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCGCT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2MR44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment