Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EHC66_RS21905 Genome accession   NZ_CP034295
Coordinates   1115800..1116981 (-) Length   393 a.a.
NCBI ID   WP_005486564.1    Uniprot ID   A0AAW8PXL2
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110800..1121981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS21890 (EHC66_22150) - 1112102..1112650 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  EHC66_RS21895 (EHC66_22155) - 1112737..1113354 (-) 618 WP_140104040.1 HAD family phosphatase -
  EHC66_RS21900 (EHC66_22160) cqsS 1113674..1115722 (+) 2049 WP_140104041.1 response regulator Regulator
  EHC66_RS21905 (EHC66_22165) cqsA 1115800..1116981 (-) 1182 WP_005486564.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EHC66_RS21910 (EHC66_22170) ylqF 1117336..1118280 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  EHC66_RS21915 (EHC66_22175) - 1118570..1119307 (-) 738 WP_029799842.1 EAL domain-containing protein -
  EHC66_RS21920 (EHC66_22180) - 1119487..1121697 (-) 2211 WP_193237404.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4984

>NTDB_id=330517 EHC66_RS21905 WP_005486564.1 1115800..1116981(-) (cqsA) [Vibrio parahaemolyticus strain 20140829008-1]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=330517 EHC66_RS21905 WP_005486564.1 1115800..1116981(-) (cqsA) [Vibrio parahaemolyticus strain 20140829008-1]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCCGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCATTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTATTTTGCCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment