Detailed information NTG0330509

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EHC66_RS14875
• Genome accession: NZ_CP034294
• Coordinates: 3025987..3027033 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20140829008-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3020987..3032033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC66_RS14850 (EHC66_15055)	rplC	3021560..3022189 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
EHC66_RS14855 (EHC66_15060)	rpsJ	3022204..3022515 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
EHC66_RS14860 (EHC66_15065)	rpmE	3022973..3023194 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
EHC66_RS14870 (EHC66_15075)	priA	3023489..3025693 (+)	2205	WP_122016050.1	primosomal protein N'	-
EHC66_RS14875 (EHC66_15080)	cytR	3025987..3027033 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
EHC66_RS14880 (EHC66_15085)	ftsN	3027209..3027754 (+)	546	WP_005481405.1	cell division protein FtsN	-
EHC66_RS14885 (EHC66_15090)	hslV	3027919..3028470 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
EHC66_RS14890 (EHC66_15095)	hslU	3028494..3029825 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
EHC66_RS14895 (EHC66_15100)	-	3030250..3030474 (-)	225	WP_029864913.1	hypothetical protein	-
EHC66_RS14900 (EHC66_15105)	-	3030662..3030784 (-)	123	WP_122016051.1	AlpA family phage regulatory protein	-
EHC66_RS14905 (EHC66_15110)	radC	3030955..3031428 (+)	474	WP_023624904.1	RadC family protein	-
EHC66_RS14910 (EHC66_15115)	-	3031425..3031856 (+)	432	WP_029864910.1	DUF2787 family protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=330509 EHC66_RS14875 WP_254894148.1 3025987..3027033(+) (cytR) [Vibrio parahaemolyticus strain 20140829008-1]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=330509 EHC66_RS14875 WP_254894148.1 3025987..3027033(+) (cytR) [Vibrio parahaemolyticus strain 20140829008-1]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTAGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTG
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871