Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EHC66_RS03240 Genome accession   NZ_CP034294
Coordinates   624550..625068 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 619550..630068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS03230 (EHC66_03295) gshA 622285..623850 (+) 1566 WP_025518038.1 glutamate--cysteine ligase -
  EHC66_RS03235 (EHC66_03300) - 623878..624483 (+) 606 WP_005484861.1 hypothetical protein -
  EHC66_RS03240 (EHC66_03305) luxS 624550..625068 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  EHC66_RS03245 (EHC66_03310) - 625130..626410 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  EHC66_RS03250 (EHC66_03315) - 626536..627330 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  EHC66_RS03255 (EHC66_03320) ffh 627543..628925 (+) 1383 WP_005462555.1 signal recognition particle protein -
  EHC66_RS03260 (EHC66_03325) rpsP 629135..629383 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  EHC66_RS03265 (EHC66_03330) rimM 629412..629960 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=330491 EHC66_RS03240 WP_005462534.1 624550..625068(+) (luxS) [Vibrio parahaemolyticus strain 20140829008-1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=330491 EHC66_RS03240 WP_005462534.1 624550..625068(+) (luxS) [Vibrio parahaemolyticus strain 20140829008-1]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment