Detailed information NTG0330489

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FQU83_RS07255
• Genome accession: NZ_CP042246
• Coordinates: 1148757..1149749 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PU-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1143757..1154749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQU83_RS07225 (FQU83_07225)	ispD	1143818..1144528 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FQU83_RS07230 (FQU83_07230)	ispF	1144528..1145007 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FQU83_RS07235 (FQU83_07235)	truD	1145004..1146053 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
FQU83_RS07240 (FQU83_07240)	surE	1146034..1146795 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FQU83_RS07245 (FQU83_07245)	pcm	1146789..1147415 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
FQU83_RS07250 (FQU83_07250)	nlpD	1147600..1148694 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FQU83_RS07255 (FQU83_07255)	rpoS	1148757..1149749 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FQU83_RS07260 (FQU83_07260)	-	1149927..1150478 (-)	552	WP_001179442.1	flavodoxin family protein	-
FQU83_RS07265 (FQU83_07265)	-	1150703..1151746 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
FQU83_RS07270 (FQU83_07270)	ygbN	1151889..1153253 (-)	1365	WP_000104443.1	GntP family transporter	-
FQU83_RS07275 (FQU83_07275)	ygbM	1153342..1154118 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=330489 FQU83_RS07255 WP_000081550.1 1148757..1149749(+) (rpoS) [Escherichia coli strain PU-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=330489 FQU83_RS07255 WP_000081550.1 1148757..1149749(+) (rpoS) [Escherichia coli strain PU-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715