Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EHC64_RS03315 Genome accession   NZ_CP034289
Coordinates   641580..642098 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 636580..647098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS03305 (EHC64_03375) gshA 639315..640880 (+) 1566 WP_025518038.1 glutamate--cysteine ligase -
  EHC64_RS03310 (EHC64_03380) - 640908..641513 (+) 606 WP_005484861.1 hypothetical protein -
  EHC64_RS03315 (EHC64_03385) luxS 641580..642098 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  EHC64_RS03320 (EHC64_03390) - 642160..643440 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  EHC64_RS03325 (EHC64_03395) - 643566..644360 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  EHC64_RS03330 (EHC64_03400) ffh 644573..645955 (+) 1383 WP_005462555.1 signal recognition particle protein -
  EHC64_RS03335 (EHC64_03405) rpsP 646165..646413 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  EHC64_RS03340 (EHC64_03410) rimM 646442..646990 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=330447 EHC64_RS03315 WP_005462534.1 641580..642098(+) (luxS) [Vibrio parahaemolyticus strain 20140722001-1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=330447 EHC64_RS03315 WP_005462534.1 641580..642098(+) (luxS) [Vibrio parahaemolyticus strain 20140722001-1]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment