Detailed information NTG0330444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EHC64_RS03060
• Genome accession: NZ_CP034289
• Coordinates: 593476..594465 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20140722001-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 588476..599465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC64_RS03025 (EHC64_03095)	ftsB	588484..588765 (+)	282	WP_005455577.1	cell division protein FtsB	-
EHC64_RS03030 (EHC64_03100)	ispD	588767..589471 (+)	705	WP_140103986.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EHC64_RS03035 (EHC64_03105)	ispF	589489..589965 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EHC64_RS03040 (EHC64_03110)	truD	590012..591055 (+)	1044	WP_140103985.1	tRNA pseudouridine(13) synthase TruD	-
EHC64_RS03045 (EHC64_03115)	surE	591055..591831 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
EHC64_RS03050 (EHC64_03120)	-	591831..592457 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EHC64_RS03055 (EHC64_03125)	-	592472..593395 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
EHC64_RS03060 (EHC64_03130)	rpoS	593476..594465 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EHC64_RS03065 (EHC64_03135)	mutS	594545..597130 (-)	2586	WP_159408075.1	DNA mismatch repair protein MutS	-
EHC64_RS03070 (EHC64_03140)	-	597303..598643 (+)	1341	WP_114867860.1	site-specific integrase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=330444 EHC64_RS03060 WP_005478537.1 593476..594465(+) (rpoS) [Vibrio parahaemolyticus strain 20140722001-1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=330444 EHC64_RS03060 WP_005478537.1 593476..594465(+) (rpoS) [Vibrio parahaemolyticus strain 20140722001-1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCTTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851