Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D5R83_RS02655 Genome accession   NZ_CP042211
Coordinates   524982..525266 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   -
Organism   Helicobacter pylori strain B128 7.13     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519982..530266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R83_RS02630 (D5R83_02630) - 520617..521753 (-) 1137 WP_000067692.1 VirB8/TrbF family protein -
  D5R83_RS08505 (D5R83_02635) - 521746..521886 (-) 141 WP_000789929.1 hypothetical protein -
  D5R83_RS02640 (D5R83_02640) comB4 521883..524459 (-) 2577 WP_000893946.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D5R83_RS02645 (D5R83_02645) - 524459..524695 (-) 237 WP_001168532.1 hypothetical protein -
  D5R83_RS02650 (D5R83_02650) comB3 524707..524970 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  D5R83_RS02655 (D5R83_02655) comB2 524982..525266 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  D5R83_RS02660 (D5R83_02660) - 525244..525621 (-) 378 WP_000571141.1 hypothetical protein -
  D5R83_RS02665 (D5R83_02665) - 525614..525844 (-) 231 WP_000189079.1 hypothetical protein -
  D5R83_RS02670 (D5R83_02670) - 525847..526635 (-) 789 WP_001140571.1 hypothetical protein -
  D5R83_RS02675 (D5R83_02675) - 526685..527350 (+) 666 WP_041201762.1 hypothetical protein -
  D5R83_RS02680 (D5R83_02680) - 527430..528503 (-) 1074 WP_001278345.1 site-specific integrase -
  D5R83_RS02685 (D5R83_02685) - 529208..529765 (+) 558 WP_001101625.1 hypothetical protein -
  D5R83_RS02690 (D5R83_02690) - 529777..530106 (+) 330 WP_000926469.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=330434 D5R83_RS02655 WP_000736106.1 524982..525266(-) (comB2) [Helicobacter pylori strain B128 7.13]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=330434 D5R83_RS02655 WP_000736106.1 524982..525266(-) (comB2) [Helicobacter pylori strain B128 7.13]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCCGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment