Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | D5R83_RS02650 | Genome accession | NZ_CP042211 |
| Coordinates | 524707..524970 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | O25204 |
| Organism | Helicobacter pylori strain B128 7.13 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 519707..529970
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R83_RS02630 (D5R83_02630) | - | 520617..521753 (-) | 1137 | WP_000067692.1 | VirB8/TrbF family protein | - |
| D5R83_RS08505 (D5R83_02635) | - | 521746..521886 (-) | 141 | WP_000789929.1 | hypothetical protein | - |
| D5R83_RS02640 (D5R83_02640) | comB4 | 521883..524459 (-) | 2577 | WP_000893946.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| D5R83_RS02645 (D5R83_02645) | - | 524459..524695 (-) | 237 | WP_001168532.1 | hypothetical protein | - |
| D5R83_RS02650 (D5R83_02650) | comB3 | 524707..524970 (-) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| D5R83_RS02655 (D5R83_02655) | comB2 | 524982..525266 (-) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| D5R83_RS02660 (D5R83_02660) | - | 525244..525621 (-) | 378 | WP_000571141.1 | hypothetical protein | - |
| D5R83_RS02665 (D5R83_02665) | - | 525614..525844 (-) | 231 | WP_000189079.1 | hypothetical protein | - |
| D5R83_RS02670 (D5R83_02670) | - | 525847..526635 (-) | 789 | WP_001140571.1 | hypothetical protein | - |
| D5R83_RS02675 (D5R83_02675) | - | 526685..527350 (+) | 666 | WP_041201762.1 | hypothetical protein | - |
| D5R83_RS02680 (D5R83_02680) | - | 527430..528503 (-) | 1074 | WP_001278345.1 | site-specific integrase | - |
| D5R83_RS02685 (D5R83_02685) | - | 529208..529765 (+) | 558 | WP_001101625.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=330433 D5R83_RS02650 WP_001177716.1 524707..524970(-) (comB3) [Helicobacter pylori strain B128 7.13]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=330433 D5R83_RS02650 WP_001177716.1 524707..524970(-) (comB3) [Helicobacter pylori strain B128 7.13]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |