Detailed information NTG0330422

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EHC70_RS14785
• Genome accession: NZ_CP034285
• Coordinates: 3017853..3018860 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 20140624012-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3012853..3023860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC70_RS14760 (EHC70_14965)	rplC	3013387..3014016 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
EHC70_RS14765 (EHC70_14970)	rpsJ	3014031..3014342 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
EHC70_RS14770 (EHC70_14975)	rpmE	3014800..3015021 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
EHC70_RS14780 (EHC70_14985)	priA	3015316..3017520 (+)	2205	WP_140102946.1	primosomal protein N'	-
EHC70_RS14785 (EHC70_14990)	cytR	3017853..3018860 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
EHC70_RS14790 (EHC70_14995)	ftsN	3019036..3019581 (+)	546	WP_140102945.1	cell division protein FtsN	-
EHC70_RS14795 (EHC70_15000)	hslV	3019745..3020296 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
EHC70_RS14800 (EHC70_15005)	hslU	3020320..3021651 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
EHC70_RS14805 (EHC70_15010)	-	3021836..3022753 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EHC70_RS14810 (EHC70_15015)	rraA	3022830..3023342 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
EHC70_RS14815 (EHC70_15020)	zapB	3023447..3023689 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=330422 EHC70_RS14785 WP_005481416.1 3017853..3018860(+) (cytR) [Vibrio parahaemolyticus strain 20140624012-1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=330422 EHC70_RS14785 WP_005481416.1 3017853..3018860(+) (cytR) [Vibrio parahaemolyticus strain 20140624012-1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCCGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTACTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904