Detailed information NTG0330401

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EHC70_RS03015
• Genome accession: NZ_CP034285
• Coordinates: 583883..584872 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20140624012-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 578883..589872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC70_RS02980 (EHC70_03040)	ftsB	578892..579173 (+)	282	WP_005455577.1	cell division protein FtsB	-
EHC70_RS02985 (EHC70_03045)	ispD	579175..579879 (+)	705	WP_140103986.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EHC70_RS02990 (EHC70_03050)	ispF	579897..580373 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EHC70_RS02995 (EHC70_03055)	truD	580420..581463 (+)	1044	WP_140103985.1	tRNA pseudouridine(13) synthase TruD	-
EHC70_RS03000 (EHC70_03060)	surE	581463..582239 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
EHC70_RS03005 (EHC70_03065)	-	582239..582865 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EHC70_RS03010 (EHC70_03070)	-	582880..583803 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
EHC70_RS03015 (EHC70_03075)	rpoS	583883..584872 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EHC70_RS03020 (EHC70_03080)	mutS	584952..587513 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
EHC70_RS03025 (EHC70_03085)	pncC	587598..588080 (+)	483	WP_140104007.1	nicotinamide-nucleotide amidase	-
EHC70_RS03030 (EHC70_03090)	recA	588280..589323 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=330401 EHC70_RS03015 WP_005478537.1 583883..584872(+) (rpoS) [Vibrio parahaemolyticus strain 20140624012-1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=330401 EHC70_RS03015 WP_005478537.1 583883..584872(+) (rpoS) [Vibrio parahaemolyticus strain 20140624012-1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCTTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851